Ilene Karsch-Mizrachi

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 18

Top Topics

Sequence Patterns

Automatic Image Annotation

Top Venues

Nucleic Acids Res.

Database J. Biol. Databases Curation

Publications

Eric W. Sayers, Mark Cavanaugh, Karen Clark, Kim D. Pruitt, Stephen T. Sherry, Linda Yankie, Ilene Karsch-Mizrachi
GenBank 2023 update. Nucleic Acids Res. 51 (D1) (2023)
Beverly A. Underwood, Linda Yankie, Eric P. Nawrocki, Vasuki Palanigobu, Sergiy Gotvyanskyy, Vincent C. Calhoun, Michael Kornbluh, Thomas G. Smith, Lydia Fleischmann, Denis Sinyakov, Colleen J. Bollin, Ilene Karsch-Mizrachi
Rapid automated validation, annotation and publication of SARS-CoV-2 sequences to GenBank. Database J. Biol. Databases Curation 2022 (2022) (2022)
Eric W. Sayers, Mark Cavanaugh, Karen Clark, Kim D. Pruitt, Conrad L. Schoch, Stephen T. Sherry, Ilene Karsch-Mizrachi
GenBank. Nucleic Acids Res. 50 (D1) (2022)
Eric W. Sayers, Mark Cavanaugh, Karen Clark, Kim D. Pruitt, Conrad L. Schoch, Stephen T. Sherry, Ilene Karsch-Mizrachi
GenBank. Nucleic Acids Res. 49 (Database-Issue) (2021)
Masanori Arita, Ilene Karsch-Mizrachi, Guy Cochrane
The international nucleotide sequence database collaboration. Nucleic Acids Res. 49 (Database-Issue) (2021)
Alejandro A. Schäffer, Richard McVeigh, Barbara Robbertse, Conrad L. Schoch, Anjanette Johnston, Beverly A. Underwood, Ilene Karsch-Mizrachi, Eric P. Nawrocki
Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation. BMC Bioinform. 22 (1) (2021)
Conrad L. Schoch, Stacy Ciufo, Michael Domrachev, Carol L. Hotton, Sivakumar Kannan, Rogneda Khovanskaya, Detlef Leipe, Richard McVeigh, Kathleen O'Neill, Barbara Robbertse, Shobha Sharma, Vladimir Soussov, John P. Sullivan, Lu Sun, Seán Turner, Ilene Karsch-Mizrachi
NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database J. Biol. Databases Curation 2020 (2020)
Alejandro A. Schäffer, Eneida Hatcher, Linda Yankie, Lara Shonkwiler, J. Rodney Brister, Ilene Karsch-Mizrachi, Eric P. Nawrocki
VADR: validation and annotation of virus sequence submissions to GenBank. BMC Bioinform. 21 (1) (2020)
Eric W. Sayers, Mark Cavanaugh, Karen Clark, James Ostell, Kim D. Pruitt, Ilene Karsch-Mizrachi
GenBank. Nucleic Acids Res. 48 (Database-Issue) (2020)
Shobha Sharma, Stacy Ciufo, Elena Starchenko, Dakshesh Darji, Larry Chlumsky, Ilene Karsch-Mizrachi, Conrad L. Schoch
The NCBI BioCollections Database. Database J. Biol. Databases Curation 2019 (2019)
Eric W. Sayers, Mark Cavanaugh, Karen Clark, James Ostell, Kim D. Pruitt, Ilene Karsch-Mizrachi
GenBank. Nucleic Acids Res. 47 (Database-Issue) (2019)
Dennis A. Benson, Mark Cavanaugh, Karen Clark, Ilene Karsch-Mizrachi, James Ostell, Kim D. Pruitt, Eric W. Sayers
GenBank. Nucleic Acids Res. 46 (Database-Issue) (2018)
Ilene Karsch-Mizrachi, Toshihisa Takagi, Guy Cochrane
The international nucleotide sequence database collaboration. Nucleic Acids Res. 46 (Database-Issue) (2018)
Alejandro A. Schäffer, Eric P. Nawrocki, Yoon Choi, Paul A. Kitts, Ilene Karsch-Mizrachi, Richard McVeigh
VecScreen_plus_taxonomy: imposing a tax(onomy) increase on vector contamination screening. Bioinform. 34 (5) (2018)
Shobha Sharma, Stacy Ciufo, Elena Starchenko, Dakshesh Darji, Larry Chlumsky, Ilene Karsch-Mizrachi, Conrad L. Schoch
The NCBI BioCollections Database. Database J. Biol. Databases Curation 2018 (2018)
Dennis A. Benson, Mark Cavanaugh, Karen Clark, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers
GenBank. Nucleic Acids Res. 45 (Database-Issue) (2017)
Guy Cochrane, Ilene Karsch-Mizrachi, Toshihisa Takagi
The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res. 44 (Database-Issue) (2016)
Karen Clark, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers
GenBank. Nucleic Acids Res. 44 (Database-Issue) (2016)
Dennis A. Benson, Karen Clark, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers
GenBank. Nucleic Acids Res. 43 (Database-Issue) (2015)
Dennis A. Benson, Karen Clark, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers
GenBank. Nucleic Acids Res. 42 (Database-Issue) (2014)
Yasukazu Nakamura, Guy Cochrane, Ilene Karsch-Mizrachi
The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res. 41 (Database-Issue) (2013)
Dennis A. Benson, Mark Cavanaugh, Karen Clark, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers
GenBank. Nucleic Acids Res. 41 (Database-Issue) (2013)
Ilene Karsch-Mizrachi, Yasukazu Nakamura, Guy Cochrane
The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res. 40 (Database-Issue) (2012)
Tanya Barrett, Karen Clark, Robert Gevorgyan, Vyatcheslav Gorelenkov, Eugene Gribov, Ilene Karsch-Mizrachi, Michael Kimelman, Kim D. Pruitt, Sergei Resenchuk, Tatiana A. Tatusova, Eugene Yaschenko, James Ostell
BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata. Nucleic Acids Res. 40 (Database-Issue) (2012)
Dennis A. Benson, Ilene Karsch-Mizrachi, Karen Clark, David J. Lipman, James Ostell, Eric W. Sayers
GenBank. Nucleic Acids Res. 40 (Database-Issue) (2012)
Pascale Gaudet, Cecilia N. Arighi, Frederic B. Bastian, Alex Bateman, Judith A. Blake, J. Michael Cherry, Peter D'Eustachio, Robert D. Finn, Michelle G. Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica C. Munoz-Torres, Darren A. Natale, Claire O'Donovan, B. F. Francis Ouellette, Kim D. Pruitt, Marc Robinson-Rechavi, Susanna-Assunta Sansone, Paul N. Schofield, Granger G. Sutton, Kimberly Van Auken, Sona Vasudevan, Cathy H. Wu, Jasmine Young, Raja Mazumder
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. Database J. Biol. Databases Curation 2012 (2012)
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, Sergey Krasnov, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 40 (Database-Issue) (2012)
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers
GenBank. Nucleic Acids Res. 39 (Database-Issue) (2011)
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
Towards BioDBcore: a community-defined information specification for biological databases. Database J. Biol. Databases Curation 2011 (2011)
Guy Cochrane, Ilene Karsch-Mizrachi, Yasukazu Nakamura
The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res. 39 (Database-Issue) (2011)
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39 (Database-Issue) (2011)
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers
GenBank. Nucleic Acids Res. 38 (Database-Issue) (2010)
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko, Jian Ye
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 37 (Database-Issue) (2009)
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers
GenBank. Nucleic Acids Res. 37 (Database-Issue) (2009)
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, David L. Wheeler
GenBank. Nucleic Acids Res. 36 (Database-Issue) (2008)
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, David L. Wheeler
GenBank. Nucleic Acids Res. 35 (Database-Issue) (2007)
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, David L. Wheeler
GenBank. Nucleic Acids Res. 34 (Database-Issue) (2006)
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, David L. Wheeler
GenBank. Nucleic Acids Res. 33 (Database-Issue) (2005)
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, David L. Wheeler
GenBank: update. Nucleic Acids Res. 32 (Database-Issue) (2004)
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, David L. Wheeler
GenBank. Nucleic Acids Res. 31 (1) (2003)
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Barbara A. Rapp, David L. Wheeler
GenBank. Nucleic Acids Res. 30 (1) (2002)
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Barbara A. Rapp, David L. Wheeler
GenBank. Nucleic Acids Res. 28 (1) (2000)
Tatiana A. Tatusova, Ilene Karsch-Mizrachi, James Ostell
Complete genomes in WWW Entrez: data representation and analysis. Bioinform. 15 (7) (1999)