Stephen H. Bryant

Publication Activity (10 Years)

Years Active: 1995-2020
Publications (10 Years): 17

Top Topics

Scientific Articles

Feature Selection

Top Venues

Nucleic Acids Res.

J. Cheminformatics

J. Chem. Inf. Model.

Publications

Jiyao Wang, Philippe Youkharibache, Dachuan Zhang, Christopher J. Lanczycki, Renata C. Geer, Thomas Madej, Lon Phan, Minghong Ward, Shennan Lu, Gabriele H. Marchler, Yanli Wang, Stephen H. Bryant, Lewis Y. Geer, Aron Marchler-Bauer
iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures. Bioinform. 36 (1) (2020)
Ming Hao, Stephen H. Bryant, Yanli Wang
Open-source chemogenomic data-driven algorithms for predicting drug-target interactions. Briefings Bioinform. 20 (4) (2019)
Ming Hao, Stephen H. Bryant, Yanli Wang
A new chemoinformatics approach with improved strategies for effective predictions of potential drugs. J. Cheminformatics 10 (1) (2018)
Takako Takeda, Ming Hao, Tiejun Cheng, Stephen H. Bryant, Yanli Wang
Predicting drug-drug interactions through drug structural similarities and interaction networks incorporating pharmacokinetics and pharmacodynamics knowledge. J. Cheminformatics 9 (1) (2017)
Amrita Roy Choudhury, Tiejun Cheng, Lon Phan, Stephen H. Bryant, Yanli Wang
Supporting precision medicine by data mining across multi-disciplines: an integrative approach for generating comprehensive linkages between single nucleotide variants (SNVs) and drug-binding sites. Bioinform. 33 (11) (2017)
Yanli Wang, Stephen H. Bryant, Tiejun Cheng, Jiyao Wang, Asta Gindulyte, Benjamin A. Shoemaker, Paul A. Thiessen, Siqian He, Jian Zhang
PubChem BioAssay: 2017 update. Nucleic Acids Res. 45 (Database-Issue) (2017)
Aron Marchler-Bauer, Bo Yu, Lianyi Han, Jane He, Christopher J. Lanczycki, Shennan Lu, Farideh Chitsaz, Myra K. Derbyshire, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, David I. Hurwitz, Fu Lu, Gabriele H. Marchler, James S. Song, Narmada Thanki, Zhouxi Wang, Roxanne A. Yamashita, Dachuan Zhang, Chanjuan Zheng, Lewis Y. Geer, Stephen H. Bryant
CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. Nucleic Acids Res. 45 (Database-Issue) (2017)
Takako Takeda, Yanli Wang, Stephen H. Bryant
Structural insights of a PI3K/mTOR dual inhibitor with the morpholino-triazine scaffold. J. Comput. Aided Mol. Des. 30 (4) (2016)
Sunghwan Kim, Paul A. Thiessen, Evan Bolton, Jie Chen, Gang Fu, Asta Gindulyte, Lianyi Han, Jane He, Siqian He, Benjamin A. Shoemaker, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant
PubChem Substance and Compound databases. Nucleic Acids Res. 44 (Database-Issue) (2016)
Sunghwan Kim, Evan Bolton, Stephen H. Bryant
Similar compounds versus similar conformers: complementarity between PubChem 2-D and 3-D neighboring sets. J. Cheminformatics 8 (1) (2016)
Ming Hao, Stephen H. Bryant, Yanli Wang
Cheminformatics analysis of the AR agonist and antagonist datasets in PubChem. J. Cheminformatics 8 (1) (2016)
Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Benjamin A. Shoemaker, Jiyao Wang, Evan Bolton, Yanli Wang, Stephen H. Bryant
Literature information in PubChem: associations between PubChem records and scientific articles. J. Cheminformatics 8 (1) (2016)
Sunghwan Kim, Paul A. Thiessen, Evan Bolton, Stephen H. Bryant
PUG-SOAP and PUG-REST: web services for programmatic access to chemical information in PubChem. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Xiang Yu, Lewis Y. Geer, Lianyi Han, Stephen H. Bryant
Target enhanced 2D similarity search by using explicit biological activity annotations and profiles. J. Cheminformatics 7 (2015)
Aron Marchler-Bauer, Myra K. Derbyshire, Noreen R. Gonzales, Shennan Lu, Farideh Chitsaz, Lewis Y. Geer, Renata C. Geer, Jane He, Marc Gwadz, David I. Hurwitz, Christopher J. Lanczycki, Fu Lu, Gabriele H. Marchler, James S. Song, Narmada Thanki, Zhouxi Wang, Roxanne A. Yamashita, Dachuan Zhang, Chanjuan Zheng, Stephen H. Bryant
CDD: NCBI's conserved domain database. Nucleic Acids Res. 43 (Database-Issue) (2015)
Volker Hähnke, Evan Bolton, Stephen H. Bryant
PubChem atom environments. J. Cheminformatics 7 (2015)
Sunghwan Kim, Lianyi Han, Bo Yu, Volker Hähnke, Evan Bolton, Stephen H. Bryant
PubChem structure-activity relationship (SAR) clusters. J. Cheminformatics 7 (2015)
Yongmei Pan, Tiejun Cheng, Yanli Wang, Stephen H. Bryant
Pathway Analysis for Drug Repositioning Based on Public Database Mining. J. Chem. Inf. Model. 54 (2) (2014)
Thomas Madej, Christopher J. Lanczycki, Dachuan Zhang, Paul A. Thiessen, Renata C. Geer, Aron Marchler-Bauer, Stephen H. Bryant
MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 42 (Database-Issue) (2014)
Yanli Wang, Tugba O. Suzek, Jian Zhang, Jiyao Wang, Siqian He, Tiejun Cheng, Benjamin A. Shoemaker, Asta Gindulyte, Stephen H. Bryant
PubChem BioAssay: 2014 update. Nucleic Acids Res. 42 (Database-Issue) (2014)
Volker Hähnke, Evan Bolton, Stephen H. Bryant
PubChem: atom environments for molecule standardization. J. Cheminformatics 5 (S-1) (2013)
Aron Marchler-Bauer, Chanjuan Zheng, Farideh Chitsaz, Myra K. Derbyshire, Lewis Y. Geer, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, David I. Hurwitz, Christopher J. Lanczycki, Fu Lu, Shennan Lu, Gabriele H. Marchler, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Dachuan Zhang, Stephen H. Bryant
CDD: conserved domains and protein three-dimensional structure. Nucleic Acids Res. 41 (Database-Issue) (2013)
Yongmei Pan, Yanli Wang, Stephen H. Bryant
Pharmacophore and 3D-QSAR Characterization of 6-Arylquinazolin-4-amines as Cdc2-like Kinase 4 (Clk4) and Dual Specificity Tyrosine-phosphorylation-regulated Kinase 1A (Dyrk1A) Inhibitors. J. Chem. Inf. Model. 53 (4) (2013)
Sunghwan Kim, Evan Bolton, Stephen H. Bryant
PubChem3D: conformer ensemble accuracy. J. Cheminformatics 5 (2013)
Sunghwan Kim, Evan Bolton, Stephen H. Bryant
Effects of multiple conformers per compound upon 3-D similarity search and bioassay data analysis. J. Cheminformatics 4 (2012)
Yanli Wang, Jewen Xiao, Tugba O. Suzek, Jian Zhang, Jiyao Wang, Zhigang Zhou, Lianyi Han, Karen Karapetyan, Svetlana Dracheva, Benjamin A. Shoemaker, Evan Bolton, Asta Gindulyte, Stephen H. Bryant
PubChem's BioAssay Database. Nucleic Acids Res. 40 (Database-Issue) (2012)
Myra K. Derbyshire, Christopher J. Lanczycki, Stephen H. Bryant, Aron Marchler-Bauer
Annotation of functional sites with the Conserved Domain Database. Database J. Biol. Databases Curation 2012 (2012)
Benjamin A. Shoemaker, Dachuan Zhang, Manoj Tyagi, Ratna R. Thangudu, Jessica H. Fong, Aron Marchler-Bauer, Stephen H. Bryant, Thomas Madej, Anna R. Panchenko
IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins. Nucleic Acids Res. 40 (Database-Issue) (2012)
Thomas Madej, Kenneth J. Addess, Jessica H. Fong, Lewis Y. Geer, Renata C. Geer, Christopher J. Lanczycki, Chunlei Liu, Shennan Lu, Aron Marchler-Bauer, Anna R. Panchenko, Jie Chen, Paul A. Thiessen, Yanli Wang, Dachuan Zhang, Stephen H. Bryant
MMDB: 3D structures and macromolecular interactions. Nucleic Acids Res. 40 (Database-Issue) (2012)
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, Sergey Krasnov, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 40 (Database-Issue) (2012)
Tiejun Cheng, Yanli Wang, Stephen H. Bryant
FSelector: a Ruby gem for feature selection. Bioinform. 28 (21) (2012)
Evan Bolton, Sunghwan Kim, Stephen H. Bryant
PubChem3D: Similar conformers. J. Cheminformatics 3 (2011)
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 39 (Database-Issue) (2011)
Sunghwan Kim, Evan Bolton, Stephen H. Bryant
PubChem3D: Biologically relevant 3-D similarity. J. Cheminformatics 3 (2011)
Tiejun Cheng, Qingliang Li, Yanli Wang, Stephen H. Bryant
Identifying Compound-Target Associations by Combining Bioactivity Profile Similarity Search and Public Databases Mining. J. Chem. Inf. Model. 51 (9) (2011)
Aron Marchler-Bauer, Shennan Lu, John B. Anderson, Farideh Chitsaz, Myra K. Derbyshire, Carol DeWeese-Scott, Jessica H. Fong, Lewis Y. Geer, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Fu Lu, Gabriele H. Marchler, Mikhail Mullokandov, Marina V. Omelchenko, Cynthia L. Robertson, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Dachuan Zhang, Naigong Zhang, Chanjuan Zheng, Stephen H. Bryant
CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res. 39 (Database-Issue) (2011)
Jun D. Zhang, Lewis Y. Geer, Evan Bolton, Stephen H. Bryant
Automated annotation of chemical names in the literature with tunable accuracy. J. Cheminformatics 3 (2011)
Tiejun Cheng, Qingliang Li, Yanli Wang, Stephen H. Bryant
Binary Classification of Aqueous Solubility Using Support Vector Machines with Reduction and Recombination Feature Selection. J. Chem. Inf. Model. 51 (2) (2011)
Sunghwan Kim, Evan Bolton, Stephen H. Bryant
PubChem3D: Shape compatibility filtering using molecular shape quadrupoles. J. Cheminformatics 3 (2011)
Evan Bolton, Sunghwan Kim, Stephen H. Bryant
PubChem3D: Conformer generation. J. Cheminformatics 3 (2011)
Viswanadham Sridhara, Aron Marchler-Bauer, Stephen H. Bryant, Lewis Y. Geer
Automatic annotation of experimentally derived, evolutionarily conserved post-translational modifications onto multiple genomes. Database J. Biol. Databases Curation 2011 (2011)
Evan Bolton, Sunghwan Kim, Stephen H. Bryant
PubChem3D: Diversity of shape. J. Cheminformatics 3 (2011)
Evan Bolton, Jie Chen, Sunghwan Kim, Lianyi Han, Siqian He, Wenyao Shi, Vahan Simonyan, Yan Sun, Paul A. Thiessen, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant
PubChem3D: a new resource for scientists. J. Cheminformatics 3 (2011)
Tiejun Cheng, Yanli Wang, Stephen H. Bryant
Investigating the correlations among the chemical structures, bioactivity profiles and molecular targets of small molecules. Bioinform. 26 (22) (2010)
Yanli Wang, Evan Bolton, Svetlana Dracheva, Karen Karapetyan, Benjamin A. Shoemaker, Tugba O. Suzek, Jiyao Wang, Jewen Xiao, Jian Zhang, Stephen H. Bryant
An overview of the PubChem BioAssay resource. Nucleic Acids Res. 38 (Database-Issue) (2010)
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 38 (Database-Issue) (2010)
Ratna R. Thangudu, Manoj Tyagi, Benjamin A. Shoemaker, Stephen H. Bryant, Anna R. Panchenko, Thomas Madej
Knowledge-based annotation of small molecule binding sites in proteins. BMC Bioinform. 11 (2010)
Lewis Y. Geer, Aron Marchler-Bauer, Renata C. Geer, Lianyi Han, Jane He, Siqian He, Chunlei Liu, Wenyao Shi, Stephen H. Bryant
The NCBI BioSystems database. Nucleic Acids Res. 38 (Database-Issue) (2010)
Benjamin A. Shoemaker, Dachuan Zhang, Ratna R. Thangudu, Manoj Tyagi, Jessica H. Fong, Aron Marchler-Bauer, Stephen H. Bryant, Tom Madej, Anna R. Panchenko
Inferred Biomolecular Interaction Server - a web server to analyze and predict protein interacting partners and binding sites. Nucleic Acids Res. 38 (Database-Issue) (2010)
Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. Panchenko, Teresa M. Przytycka, Paul A. Thiessen, Stephen H. Bryant
State of the art: refinement of multiple sequence alignments. BMC Bioinform. 11 (2010)
Qingliang Li, Yanli Wang, Stephen H. Bryant
A novel method for mining highly imbalanced high-throughput screening data in PubChem. Bioinform. 25 (24) (2009)
Wolf-Dietrich Ihlenfeldt, Evan Bolton, Stephen H. Bryant
The PubChem chemical structure sketcher. J. Cheminformatics 1 (2009)
Yanli Wang, Jewen Xiao, Tugba O. Suzek, Jian Zhang, Jiyao Wang, Stephen H. Bryant
PubChem: a public information system for analyzing bioactivities of small molecules. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko, Jian Ye
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 37 (Database-Issue) (2009)
Lianyi Han, Yanli Wang, Stephen H. Bryant
A survey of across-target bioactivity results of small molecules in PubChem. Bioinform. 25 (17) (2009)
Aron Marchler-Bauer, John B. Anderson, Farideh Chitsaz, Myra K. Derbyshire, Carol DeWeese-Scott, Jessica H. Fong, Lewis Y. Geer, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Shennan Lu, Gabriele H. Marchler, Mikhail Mullokandov, James S. Song, Asba Tasneem, Narmada Thanki, Roxanne A. Yamashita, Dachuan Zhang, Naigong Zhang, Stephen H. Bryant
CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res. 37 (Database-Issue) (2009)
Yanli Wang, Stephen H. Bryant
PubChem: The NIH Public Repository for Small Molecules and Biological Screening Results. BIOCOMP (2009)
Zhigang Zhou, Yanli Wang, Stephen H. Bryant
Computational analysis of the cathepsin B inhibitors activities through LR-MMPBSA binding affinity calculation based on docked complex. J. Comput. Chem. 30 (14) (2009)
Lianyi Han, Yanli Wang, Stephen H. Bryant
Developing and validating predictive decision tree models from mining chemical structural fingerprints and high-throughput screening data in PubChem. BMC Bioinform. 9 (2008)
David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, Oleg Khovayko, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Martin Shumway, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 36 (Database-Issue) (2008)
Aron Marchler-Bauer, John B. Anderson, Myra K. Derbyshire, Carol DeWeese-Scott, Noreen R. Gonzales, Marc Gwadz, Luning Hao, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Dmitri M. Krylov, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Shennan Lu, Gabriele H. Marchler, Mikhail Mullokandov, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Jodie J. Yin, Dachuan Zhang, Stephen H. Bryant
CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35 (Database-Issue) (2007)
Yanli Wang, Kenneth J. Addess, Jie Chen, Lewis Y. Geer, Jane He, Siqian He, Shennan Lu, Thomas Madej, Aron Marchler-Bauer, Paul A. Thiessen, Naigong Zhang, Stephen H. Bryant
MMDB: annotating protein sequences with Entrez's 3D-structure database. Nucleic Acids Res. 35 (Database-Issue) (2007)
Yulia V. Borodina, Evan Bolton, Fabien Fontaine, Stephen H. Bryant
Assessment of Conformational Ensemble Sizes Necessary for Specific Resolutions of Coverage of Conformational Space. J. Chem. Inf. Model. 47 (4) (2007)
David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Yuri Kapustin, Oleg Khovayko, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Vadim Miller, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 35 (Database-Issue) (2007)
David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David L. Kenton, Oleg Khovayko, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Stephen T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tugba O. Suzek, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 34 (Database-Issue) (2006)
Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. Panchenko, Teresa M. Przytycka, Paul A. Thiessen, Stephen H. Bryant
State of the art: refinement of multiple sequence alignments. BMC Bioinform. 7 (2006)
Maricel G. Kann, Paul A. Thiessen, Anna R. Panchenko, Alejandro A. Schäffer, Stephen F. Altschul, Stephen H. Bryant
A structure-based method for protein sequence alignment. Bioinform. 21 (8) (2005)
Aron Marchler-Bauer, John B. Anderson, Praveen F. Cherukuri, Carol DeWeese-Scott, Lewis Y. Geer, Marc Gwadz, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Gabriele H. Marchler, Mikhail Mullokandov, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Jodie J. Yin, Dachuan Zhang, Stephen H. Bryant
CDD: a Conserved Domain Database for protein classification. Nucleic Acids Res. 33 (Database-Issue) (2005)
David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Wolfgang Helmberg, David L. Kenton, Oleg Khovayko, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Joan U. Pontius, Kim D. Pruitt, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Grigory Starchenko, Tugba O. Suzek, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 33 (Database-Issue) (2005)
Aron Marchler-Bauer, Stephen H. Bryant
CD-Search: protein domain annotations on the fly. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Aron Marchler-Bauer, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Anna R. Panchenko, Bachoti S. Rao, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant
CDD: a curated Entrez database of conserved domain alignments. Nucleic Acids Res. 31 (1) (2003)
Jie Chen, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Aron Marchler-Bauer, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Bachoti S. Rao, Anna R. Panchenko, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant
MMDB: Entrez's 3D-structure database. Nucleic Acids Res. 31 (1) (2003)
Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, Paul A. Thiessen, Lewis Y. Geer, Stephen H. Bryant
CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res. 30 (1) (2002)
Yanli Wang, John B. Anderson, Jie Chen, Lewis Y. Geer, Siqian He, David I. Hurwitz, Cynthia A. Liebert, Thomas Madej, Gabriele H. Marchler, Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Stephen H. Bryant
MMDB: Entrez's 3D-structure database. Nucleic Acids Res. 30 (1) (2002)
Yanli Wang, Kenneth J. Addess, Lewis Y. Geer, Thomas Madej, Aron Marchler-Bauer, Diane Zimmerman, Stephen H. Bryant
MMDB: 3D structure data in Entrez. Nucleic Acids Res. 28 (1) (2000)
Sarah J. Wheelan, Aron Marchler-Bauer, Stephen H. Bryant
Domain size distributions can predict domain boundaries. Bioinform. 16 (7) (2000)
Aron Marchler-Bauer, Kenneth J. Addess, Colombe Chappey, Lewis Y. Geer, Thomas Madej, Yo Matsuo, Yanli Wang, Stephen H. Bryant
MMDB: Entrez's 3D structure database. Nucleic Acids Res. 27 (1) (1999)
Hitomi Ohkawa, James Ostell, Stephen H. Bryant
MMDB: An ASN.1 Specification for Macromolecular Structure. ISMB (1995)