Stephen F. Altschul

Publication Activity (10 Years)

Years Active: 1989-2021
Publications (10 Years): 8

Top Topics

Detect Outliers

Sequence Alignment

Outlier Detection

Dirichlet Process

Top Venues

PLoS Comput. Biol.

J. Comput. Biol.

Publications

Andrew F. Neuwald, Bryan D. Kolaczkowski, Stephen F. Altschul
eCOMPASS: evaluative comparison of multiple protein alignments by statistical score. Bioinform. 37 (20) (2021)
Andrew F. Neuwald, Stephen F. Altschul
Statistical investigations of protein residue direct couplings. PLoS Comput. Biol. 14 (12) (2018)
Stephen F. Altschul, Andrew F. Neuwald
Initial Cluster Analysis. J. Comput. Biol. 25 (2) (2018)
Nidhi Shah, Stephen F. Altschul, Mihai Pop
Outlier detection in BLAST hits. Algorithms Mol. Biol. 13 (1) (2018)
Nidhi Shah, Stephen F. Altschul, Mihai Pop
Outlier Detection in BLAST Hits. WABI (2017)
Andrew F. Neuwald, Stephen F. Altschul
Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations. PLoS Comput. Biol. 12 (12) (2016)
Andrew F. Neuwald, Stephen F. Altschul
Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties. PLoS Comput. Biol. 12 (5) (2016)
Yi-Kuo Yu, John A. Capra, Aleksandar Stojmirovic, David Landsman, Stephen F. Altschul
Log-odds sequence logos. Bioinform. 31 (3) (2015)
Viet-An Nguyen, Jordan L. Boyd-Graber, Stephen F. Altschul
Dirichlet Mixtures, the Dirichlet Process, and the Structure of Protein Space. J. Comput. Biol. 20 (1) (2013)
Xugang Ye, Yi-Kuo Yu, Stephen F. Altschul
On the Inference of Dirichlet Mixture Priors for Protein Sequence Comparison. J. Comput. Biol. 18 (8) (2011)
Xugang Ye, Guoli Wang, Stephen F. Altschul
An assessment of substitution scores for protein profile-profile comparison. Bioinform. 27 (24) (2011)
Yi-Kuo Yu, Stephen F. Altschul
The Complexity of the Dirichlet Model for Multiple Alignment Data. J. Comput. Biol. 18 (8) (2011)
Stephen F. Altschul, John C. Wootton, Elena Zaslavsky, Yi-Kuo Yu
The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment. PLoS Comput. Biol. 6 (7) (2010)
Xugang Ye, Yi-Kuo Yu, Stephen F. Altschul
Compositional Adjustment of Dirichlet Mixture Priors. J. Comput. Biol. 17 (12) (2010)
Aleksandar Stojmirovic, E. Michael Gertz, Stephen F. Altschul, Yi-Kuo Yu
The effectiveness of position- and composition-specific gap costs for protein similarity searches. ISMB (2008)
Yi-Kuo Yu, Stephen F. Altschul
The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions. Bioinform. 21 (7) (2005)
Maricel G. Kann, Paul A. Thiessen, Anna R. Panchenko, Alejandro A. Schäffer, Stephen F. Altschul, Stephen H. Bryant
A structure-based method for protein sequence alignment. Bioinform. 21 (8) (2005)
Alejandro A. Schäffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, Stephen F. Altschul
IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. Bioinform. 15 (12) (1999)
Charles E. Lawrence, Stephen F. Altschul, John C. Wootton, Mark S. Boguski, Andrew F. Neuwald, Jun S. Liu
A Gibbs Sampler for the Detection of Subtle Motifs in Multiple Sequences. HICSS (5) (1994)
C. Thomas White, Raj K. Singh, Peter B. Reintjes, Jordan Lampe, Bruce W. Erickson, Wayne D. Dettloff, Vernon L. Chi, Stephen F. Altschul
BioSCAN: A VLSI-Based System for Biosequence Analysis. ICCD (1991)
Stephen F. Altschul
Leaf Pairs and Tree Dissections. SIAM J. Discret. Math. 2 (3) (1989)