Paul A. Thiessen

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 13

Top Topics

Structural Similarities

Scientific Articles

Top Venues

Nucleic Acids Res.

J. Cheminformatics

Frontiers Res. Metrics Anal.

Publications

Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan E. Bolton
PubChem 2023 update. Nucleic Acids Res. 51 (D1) (2023)
Antanas Vaitkus, Andrius Merkys, Thomas Sander, Miguel Quirós, Paul A. Thiessen, Evan E. Bolton, Saulius Grazulis
A workflow for deriving chemical entities from crystallographic data and its application to the Crystallography Open Database. J. Cheminformatics 15 (1) (2023)
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton
PubChem in 2021: new data content and improved web interfaces. Nucleic Acids Res. 49 (Database-Issue) (2021)
Leonid Zaslavsky, Tiejun Cheng, Asta Gindulyte, Siqian He, Sunghwan Kim, Qingliang Li, Paul A. Thiessen, Bo Yu, Evan Bolton
Discovering and Summarizing Relationships Between Chemicals, Genes, Proteins, and Diseases in PubChem. Frontiers Res. Metrics Anal. 6 (2021)
Emma Schymanski, Todor Kondic, Steffen Neumann, Paul A. Thiessen, Jian Zhang, Evan Bolton
Empowering large chemical knowledge bases for exposomics: PubChemLite meets MetFrag. J. Cheminformatics 13 (1) (2021)
Jonathan M. Goodman, Igor V. Pletnev, Paul A. Thiessen, Evan Bolton, Stephen R. Heller
InChI version 1.06: now more than 99.99% reliable. J. Cheminformatics 13 (1) (2021)
Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Jian Zhang, Asta Gindulyte, Evan Bolton
PUG-View: programmatic access to chemical annotations integrated in PubChem. J. Cheminformatics 11 (1) (2019)
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton
PubChem 2019 update: improved access to chemical data. Nucleic Acids Res. 47 (Database-Issue) (2019)
Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Evan Bolton
An update on PUG-REST: RESTful interface for programmatic access to PubChem. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Yanli Wang, Stephen H. Bryant, Tiejun Cheng, Jiyao Wang, Asta Gindulyte, Benjamin A. Shoemaker, Paul A. Thiessen, Siqian He, Jian Zhang
PubChem BioAssay: 2017 update. Nucleic Acids Res. 45 (Database-Issue) (2017)
Sunghwan Kim, Paul A. Thiessen, Evan Bolton, Jie Chen, Gang Fu, Asta Gindulyte, Lianyi Han, Jane He, Siqian He, Benjamin A. Shoemaker, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant
PubChem Substance and Compound databases. Nucleic Acids Res. 44 (Database-Issue) (2016)
Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Benjamin A. Shoemaker, Jiyao Wang, Evan Bolton, Yanli Wang, Stephen H. Bryant
Literature information in PubChem: associations between PubChem records and scientific articles. J. Cheminformatics 8 (1) (2016)
Sunghwan Kim, Paul A. Thiessen, Evan Bolton, Stephen H. Bryant
PUG-SOAP and PUG-REST: web services for programmatic access to chemical information in PubChem. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Thomas Madej, Christopher J. Lanczycki, Dachuan Zhang, Paul A. Thiessen, Renata C. Geer, Aron Marchler-Bauer, Stephen H. Bryant
MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 42 (Database-Issue) (2014)
Thomas Madej, Kenneth J. Addess, Jessica H. Fong, Lewis Y. Geer, Renata C. Geer, Christopher J. Lanczycki, Chunlei Liu, Shennan Lu, Aron Marchler-Bauer, Anna R. Panchenko, Jie Chen, Paul A. Thiessen, Yanli Wang, Dachuan Zhang, Stephen H. Bryant
MMDB: 3D structures and macromolecular interactions. Nucleic Acids Res. 40 (Database-Issue) (2012)
Evan Bolton, Jie Chen, Sunghwan Kim, Lianyi Han, Siqian He, Wenyao Shi, Vahan Simonyan, Yan Sun, Paul A. Thiessen, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant
PubChem3D: a new resource for scientists. J. Cheminformatics 3 (2011)
Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. Panchenko, Teresa M. Przytycka, Paul A. Thiessen, Stephen H. Bryant
State of the art: refinement of multiple sequence alignments. BMC Bioinform. 11 (2010)
Yanli Wang, Kenneth J. Addess, Jie Chen, Lewis Y. Geer, Jane He, Siqian He, Shennan Lu, Thomas Madej, Aron Marchler-Bauer, Paul A. Thiessen, Naigong Zhang, Stephen H. Bryant
MMDB: annotating protein sequences with Entrez's 3D-structure database. Nucleic Acids Res. 35 (Database-Issue) (2007)
Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. Panchenko, Teresa M. Przytycka, Paul A. Thiessen, Stephen H. Bryant
State of the art: refinement of multiple sequence alignments. BMC Bioinform. 7 (2006)
Maricel G. Kann, Paul A. Thiessen, Anna R. Panchenko, Alejandro A. Schäffer, Stephen F. Altschul, Stephen H. Bryant
A structure-based method for protein sequence alignment. Bioinform. 21 (8) (2005)
Aron Marchler-Bauer, John B. Anderson, Praveen F. Cherukuri, Carol DeWeese-Scott, Lewis Y. Geer, Marc Gwadz, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Gabriele H. Marchler, Mikhail Mullokandov, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Jodie J. Yin, Dachuan Zhang, Stephen H. Bryant
CDD: a Conserved Domain Database for protein classification. Nucleic Acids Res. 33 (Database-Issue) (2005)
Aron Marchler-Bauer, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Anna R. Panchenko, Bachoti S. Rao, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant
CDD: a curated Entrez database of conserved domain alignments. Nucleic Acids Res. 31 (1) (2003)
Jie Chen, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Aron Marchler-Bauer, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Bachoti S. Rao, Anna R. Panchenko, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant
MMDB: Entrez's 3D-structure database. Nucleic Acids Res. 31 (1) (2003)
Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, Paul A. Thiessen, Lewis Y. Geer, Stephen H. Bryant
CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res. 30 (1) (2002)
Yanli Wang, John B. Anderson, Jie Chen, Lewis Y. Geer, Siqian He, David I. Hurwitz, Cynthia A. Liebert, Thomas Madej, Gabriele H. Marchler, Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Stephen H. Bryant
MMDB: Entrez's 3D-structure database. Nucleic Acids Res. 30 (1) (2002)