Yi-Kuo Yu

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 2

Top Topics

Mass Spectrometry

Top Venues

J. Comput. Biol.

Publications

Aleksey Y. Ogurtsov, Gelio Alves, Alex Rubio, Brendan Joyce, Björn Andersson, Roger Karlsson, Edward R. B. Moore, Yi-Kuo Yu
MiCId GUI: The Graphical User Interface for MiCId, a Fast Microorganism Classification and Identification Workflow with Accurate Statistics and High Recall. J. Comput. Biol. 31 (2) (2024)
Gelio Alves, Yi-Kuo Yu
Confidence assignment for mass spectrometry based peptide identifications via the extreme value distribution. Bioinform. 32 (17) (2016)
Gelio Alves, Yi-Kuo Yu
Mass spectrometry-based protein identification with accurate statistical significance assignment. Bioinform. 31 (5) (2015)
Yi-Kuo Yu, John A. Capra, Aleksandar Stojmirovic, David Landsman, Stephen F. Altschul
Log-odds sequence logos. Bioinform. 31 (3) (2015)
Aleksandar Stojmirovic, Alexander Bliskovsky, Yi-Kuo Yu
CytoSaddleSum: a functional enrichment analysis plugin for Cytoscape based on sum-of-weights scores. Bioinform. 28 (6) (2012)
Aleksandar Stojmirovic, Yi-Kuo Yu
Information Flow in Interaction Networks II: Channels, Path Lengths, and Potentials. J. Comput. Biol. 19 (4) (2012)
Aleksandar Stojmirovic, Yi-Kuo Yu
ppiTrim: constructing non-redundant and up-to-date interactomes. Database J. Biol. Databases Curation 2011 (2011)
Xugang Ye, Yi-Kuo Yu, Stephen F. Altschul
On the Inference of Dirichlet Mixture Priors for Protein Sequence Comparison. J. Comput. Biol. 18 (8) (2011)
Aleksandar Stojmirovic, Alexander Bliskovsky, Yi-Kuo Yu
CytoITMprobe: a network information flow plugin for Cytoscape CoRR (2011)
Yi-Kuo Yu, Stephen F. Altschul
The Complexity of the Dirichlet Model for Multiple Alignment Data. J. Comput. Biol. 18 (8) (2011)
Aleksandar Stojmirovic, Yi-Kuo Yu
Robust and accurate data enrichment statistics via distribution function of sum of weights. Bioinform. 26 (21) (2010)
Stephen F. Altschul, John C. Wootton, Elena Zaslavsky, Yi-Kuo Yu
The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment. PLoS Comput. Biol. 6 (7) (2010)
Xugang Ye, Yi-Kuo Yu, Stephen F. Altschul
Compositional Adjustment of Dirichlet Mixture Priors. J. Comput. Biol. 17 (12) (2010)
Aleksandar Stojmirovic, Yi-Kuo Yu
Geometric Aspects of Biological Sequence Comparison. J. Comput. Biol. 16 (4) (2009)
Aleksandar Stojmirovic, Yi-Kuo Yu
ITM Probe: analyzing information flow in protein networks. Bioinform. 25 (18) (2009)
Aleksandar Stojmirovic, E. Michael Gertz, Stephen F. Altschul, Yi-Kuo Yu
The effectiveness of position- and composition-specific gap costs for protein similarity searches. ISMB (2008)
Aleksandar Stojmirovic, Yi-Kuo Yu
Information Flow in Interaction Networks. J. Comput. Biol. 14 (8) (2007)
Yi-Kuo Yu, Stephen F. Altschul
The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions. Bioinform. 21 (7) (2005)
Gelio Alves, Yi-Kuo Yu
based statistics. Bioinform. 21 (19) (2005)
Teresa M. Przytycka, Yi-Kuo Yu
Scale-free networks versus evolutionary drift. Comput. Biol. Chem. 28 (4) (2004)
Yi-Kuo Yu, Ralf Bundschuh, Terence Hwa
Hybrid alignment: high-performance with universal statistics. Bioinform. 18 (6) (2002)
Yi-Kuo Yu, Terence Hwa
Statistical Significance of Probabilistic Sequence Alignment and Related Local Hidden Markov Models. J. Comput. Biol. 8 (3) (2001)