Aleksey Y. Ogurtsov

Publication Activity (10 Years)

Years Active: 1995-2024
Publications (10 Years): 2

Top Topics

Accurate Classification

Graphical User Interface

Top Venues

J. Comput. Biol.

Publications

Aleksey Y. Ogurtsov, Gelio Alves, Alex Rubio, Brendan Joyce, Björn Andersson, Roger Karlsson, Edward R. B. Moore, Yi-Kuo Yu
MiCId GUI: The Graphical User Interface for MiCId, a Fast Microorganism Classification and Identification Workflow with Accurate Statistics and High Recall. J. Comput. Biol. 31 (2) (2024)
Olga V. Matveeva, Yury D. Nechipurenko, Evgeniy Riabenko, Chikako Ragan, Nafisa N. Nazipova, Aleksey Y. Ogurtsov, Svetlana A. Shabalina
Optimization of signal-to-noise ratio for efficient microarray probe design. Bioinform. 32 (17) (2016)
Svetlana A. Shabalina, Aleksey Y. Ogurtsov, Anna Kashina, Nikolay A. Spiridonov
The role of periodic mRNA secondary structure and RNA-RNA interactions in biological regulation and complexity. CMSR@ECCB (2014)
Aleksey Y. Ogurtsov, Svetlana A. Shabalina, Alexey S. Kondrashov, Mikhail A. Roytberg
Analysis of internal loops within the RNA secondary structure in almost quadratic time. Bioinform. 22 (11) (2006)
Svetlana A. Shabalina, Alexey N. Spiridonov, Aleksey Y. Ogurtsov
Computational models with thermodynamic and composition features improve siRNA design. BMC Bioinform. 7 (2006)
Olga V. Matveeva, Brian T. Foley, Vladimir A. Nemtsov, Raymond F. Gesteland, Senya Matsufuji, John F. Atkins, Aleksey Y. Ogurtsov, Svetlana A. Shabalina
Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome. BMC Bioinform. 5 (2004)
Aleksey Y. Ogurtsov, Mikhail A. Roytberg, Svetlana A. Shabalina, Alexey S. Kondrashov
OWEN: aligning long collinear regions of genomes. Bioinform. 18 (12) (2002)
Mikhail A. Roytberg, Aleksey Y. Ogurtsov, Svetlana A. Shabalina, Alexey S. Kondrashov
A hierarchical approach to aligning collinear regions of genomes. Bioinform. 18 (12) (2002)
Nafisa N. Nazipova, Svetlana A. Shabalina, Aleksey Y. Ogurtsov, Alexey S. Kondrashov, Mikhail A. Roytberg, G. V. Buryakov, S. E. Vernoslov
SAMSON: a software package for the biopolymer primary structure analysis. Comput. Appl. Biosci. 11 (4) (1995)