John F. Atkins

Publication Activity (10 Years)

Years Active: 2000-2013
Publications (10 Years): 0

Top Topics

High Throughput

Gene Regulatory Networks

Mass Spectrometry

Top Venues

Publications

Patrick B. F. O'Connor, Gene-Wei Li, Jonathan S. Weissman, John F. Atkins, Pavel V. Baranov
rRNA: mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments. Bioinform. 29 (12) (2013)
Michaël Bekaert, Andrew E. Firth, Yan Zhang, Vadim N. Gladyshev, John F. Atkins, Pavel V. Baranov
Recode-2: new design, new search tools, and many more genes. Nucleic Acids Res. 38 (Database-Issue) (2010)
Michaël Bekaert, Ivaylo P. Ivanov, John F. Atkins, Pavel V. Baranov
Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinform. 9 (2008)
Michaël Bekaert, John F. Atkins, Pavel V. Baranov
ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinform. 22 (20) (2006)
Olga V. Matveeva, Brian T. Foley, Vladimir A. Nemtsov, Raymond F. Gesteland, Senya Matsufuji, John F. Atkins, Aleksey Y. Ogurtsov, Svetlana A. Shabalina
Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome. BMC Bioinform. 5 (2004)
Pavel V. Baranov, Olga L. Gurvich, Andrew W. Hammer, Raymond F. Gesteland, John F. Atkins
RECODE 2003. Nucleic Acids Res. 31 (1) (2003)
Atul A. Shah, Michael C. Giddings, Jasmin B. Parvaz, Raymond F. Gesteland, John F. Atkins, Ivaylo P. Ivanov
Computational identification of putative programmed translational frameshift sites. Bioinform. 18 (8) (2002)
Pavel V. Baranov, Olga L. Gurvich, Olivier Fayet, Marie Françoise Prère, W. Allen Miller, Raymond F. Gesteland, John F. Atkins, Michael C. Giddings
RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression. Nucleic Acids Res. 29 (1) (2001)
Michael C. Giddings, Olga V. Matveeva, John F. Atkins, Raymond F. Gesteland
ODNBase-a web database for antisense oligonucleotide effectiveness studies. Bioinform. 16 (9) (2000)