Pavel V. Baranov

Publication Activity (10 Years)

Years Active: 1998-2021
Publications (10 Years): 4

Top Topics

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Stephen J. Kiniry, Ciara E. Judge, Audrey M. Michel, Pavel V. Baranov
Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Stephen J. Kiniry, Patrick B. F. O'Connor, Audrey M. Michel, Pavel V. Baranov
Trips-Viz: a transcriptome browser for exploring Ribo-Seq data. Nucleic Acids Res. 47 (Database-Issue) (2019)
Audrey M. Michel, Stephen J. Kiniry, Patrick B. F. O'Connor, James P. A. Mullan, Pavel V. Baranov
GWIPS-viz: 2018 update. Nucleic Acids Res. 46 (Database-Issue) (2018)
Md. Rezaul Karim, Audrey M. Michel, Achille Zappa, Pavel V. Baranov, Ratnesh Sahay, Dietrich Rebholz-Schuhmann
Improving data workflow systems with cloud services and use of open data for bioinformatics research. Briefings Bioinform. 19 (5) (2018)
Audrey M. Michel, Gearoid Fox, Anmol M. Kiran, Christof De Bo, Patrick B. F. O'Connor, Stephen M. Heaphy, James P. A. Mullan, Claire A. Donohue, Desmond G. Higgins, Pavel V. Baranov
GWIPS-viz: development of a ribo-seq genome browser. Nucleic Acids Res. 42 (Database-Issue) (2014)
Audrey M. Michel, Dmitry E. Andreev, Pavel V. Baranov
Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning. BMC Bioinform. 15 (2014)
Ivan Antonov, Pavel V. Baranov, Mark Borodovsky
GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences. Nucleic Acids Res. 41 (Database-Issue) (2013)
Anmol M. Kiran, John J. O'Mahony, Komal Sanjeev, Pavel V. Baranov
Darned in 2013: inclusion of model organisms and linking with Wikipedia. Nucleic Acids Res. 41 (Database-Issue) (2013)
Patrick B. F. O'Connor, Gene-Wei Li, Jonathan S. Weissman, John F. Atkins, Pavel V. Baranov
rRNA: mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments. Bioinform. 29 (12) (2013)
Virag Sharma, David P. Murphy, Gregory M. Provan, Pavel V. Baranov
CodonLogo: a sequence logo-based viewer for codon patterns. Bioinform. 28 (14) (2012)
Michaël Bekaert, Andrew E. Firth, Yan Zhang, Vadim N. Gladyshev, John F. Atkins, Pavel V. Baranov
Recode-2: new design, new search tools, and many more genes. Nucleic Acids Res. 38 (Database-Issue) (2010)
Anmol M. Kiran, Pavel V. Baranov
DARNED: a DAtabase of RNa EDiting in humans. Bioinform. 26 (14) (2010)
Michaël Bekaert, Ivaylo P. Ivanov, John F. Atkins, Pavel V. Baranov
Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinform. 9 (2008)
Michaël Bekaert, John F. Atkins, Pavel V. Baranov
ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinform. 22 (20) (2006)
Pavel V. Baranov, Olga L. Gurvich, Andrew W. Hammer, Raymond F. Gesteland, John F. Atkins
RECODE 2003. Nucleic Acids Res. 31 (1) (2003)
Pavel V. Baranov, Olga L. Gurvich, Olivier Fayet, Marie Françoise Prère, W. Allen Miller, Raymond F. Gesteland, John F. Atkins, Michael C. Giddings
RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression. Nucleic Acids Res. 29 (1) (2001)
Pavel V. Baranov, Andrew V. Kubarenko, Olga L. Gurvich, Tatyana A. Shamolina, Richard Brimacombe
The Database of Ribosomal Cross-links: an update. Nucleic Acids Res. 27 (1) (1999)
Pavel V. Baranov, Petr V. Sergiev, Olga A. Dontsova, Alexey A. Bogdanov, Richard Brimacombe
The Database of Ribosomal Cross links (DRC). Nucleic Acids Res. 26 (1) (1998)