Svetlana A. Shabalina

Publication Activity (10 Years)

Years Active: 1995-2016
Publications (10 Years): 1

Top Topics

High Throughput

Constantly Growing

Secondary Structure

Top Venues

PLoS Comput. Biol.

Publications

Olga V. Matveeva, Yury D. Nechipurenko, Evgeniy Riabenko, Chikako Ragan, Nafisa N. Nazipova, Aleksey Y. Ogurtsov, Svetlana A. Shabalina
Optimization of signal-to-noise ratio for efficient microarray probe design. Bioinform. 32 (17) (2016)
Svetlana A. Shabalina, Aleksey Y. Ogurtsov, Anna Kashina, Nikolay A. Spiridonov
The role of periodic mRNA secondary structure and RNA-RNA interactions in biological regulation and complexity. CMSR@ECCB (2014)
David Managadze, Alexander E. Lobkovsky, Yuri I. Wolf, Svetlana A. Shabalina, Igor B. Rogozin, Eugene V. Koonin
The Vast, Conserved Mammalian lincRNome. PLoS Comput. Biol. 9 (2) (2013)
Aleksey Y. Ogurtsov, Svetlana A. Shabalina, Alexey S. Kondrashov, Mikhail A. Roytberg
Analysis of internal loops within the RNA secondary structure in almost quadratic time. Bioinform. 22 (11) (2006)
Svetlana A. Shabalina, Alexey N. Spiridonov, Aleksey Y. Ogurtsov
Computational models with thermodynamic and composition features improve siRNA design. BMC Bioinform. 7 (2006)
Olga V. Matveeva, Brian T. Foley, Vladimir A. Nemtsov, Raymond F. Gesteland, Senya Matsufuji, John F. Atkins, Aleksey Y. Ogurtsov, Svetlana A. Shabalina
Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome. BMC Bioinform. 5 (2004)
Aleksey Y. Ogurtsov, Mikhail A. Roytberg, Svetlana A. Shabalina, Alexey S. Kondrashov
OWEN: aligning long collinear regions of genomes. Bioinform. 18 (12) (2002)
Mikhail A. Roytberg, Aleksey Y. Ogurtsov, Svetlana A. Shabalina, Alexey S. Kondrashov
A hierarchical approach to aligning collinear regions of genomes. Bioinform. 18 (12) (2002)
Nafisa N. Nazipova, Svetlana A. Shabalina, Aleksey Y. Ogurtsov, Alexey S. Kondrashov, Mikhail A. Roytberg, G. V. Buryakov, S. E. Vernoslov
SAMSON: a software package for the biopolymer primary structure analysis. Comput. Appl. Biosci. 11 (4) (1995)