David Landsman

Publication Activity (10 Years)

Years Active: 1996-2022
Publications (10 Years): 10

Top Topics

Combining Multiple

Subcellular Localization

Top Venues

Database J. Biol. Databases Curation

Publications

David Landsman, Jerry Zikun Chen, Hussain Zaidi
BeamR: Beam Reweighing with Attribute Discriminators for Controllable Text Generation. AACL/IJCNLP (Findings) (2022)
David Landsman, Philipp Kats, Aleksandra Nenko, Sergei Kudinov, Stanislav Sobolevsky
Social Activity Networks Shaping St. Petersburg. HICSS (2021)
Michael Y. Galperin, Yuri I. Wolf, Kira S. Makarova, Roberto Vera Alvarez, David Landsman, Eugene V. Koonin
COG database update: focus on microbial diversity, model organisms, and widespread pathogens. Nucleic Acids Res. 49 (Database-Issue) (2021)
David Landsman, Huiting Ma, Jesse Knight, Kevin Gough, Sharmistha Mishra
A flexible integer linear programming formulation for scheduling clinician on-call service in hospitals. CoRR (2019)
Roberto Vera Alvarez, Lorinc Sándor Pongor, Leonardo Mariño-Ramírez, David Landsman
TPMCalculator: one-step software to quantify mRNA abundance of genomic features. Bioinform. 35 (11) (2019)
Roberto Vera Alvarez, Shan Li, David Landsman, Ivan Ovcharenko
SNPDelScore: combining multiple methods to score deleterious effects of noncoding mutations in the human genome. Bioinform. 34 (2) (2018)
Clément Levin, Emeric Dynomant, Bruno J. Gonzalez, Laurent Mouchard, David Landsman, Eivind Hovig, Kristian Vlahovicek
A data-supported history of bioinformatics tools. CoRR (2018)
Roberto Vera Alvarez, Newton Medeiros Vidal, Gina A. Garzón-Martínez, Luz S. Barrero, David Landsman, Leonardo Mariño-Ramírez
Workflow and web application for annotating NCBI BioProject transcriptome data. Database J. Biol. Databases Curation 2017 (2017)
Natalia Acevedo-Luna, Leonardo Mariño-Ramírez, Armand Halbert, Ulla Hansen, David Landsman, John L. Spouge
Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules. BMC Bioinform. 17 (2016)
Eli J. Draizen, Alexey K. Shaytan, Leonardo Mariño-Ramírez, Paul B. Talbert, David Landsman, Anna R. Panchenko
HistoneDB 2.0: a histone database with variants - an integrated resource to explore histones and their variants. Database J. Biol. Databases Curation 2016 (2016)
Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David E. Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Ísberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier Jr., Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Åke Västermark, Gerrit Vriend
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database J. Biol. Databases Curation 2015 (2015)
Yi-Kuo Yu, John A. Capra, Aleksandar Stojmirovic, David Landsman, Stephen F. Altschul
Log-odds sequence logos. Bioinform. 31 (3) (2015)
Jingchu Luo, Harm Nijveen, Teresa K. Attwood, David Phillip Judge, Sándor Pongor, David Landsman, Martin J. Bishop
Obituary: In memory of Jack Leunissen. Briefings Bioinform. 14 (3) (2013)
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, Sergey Krasnov, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 40 (Database-Issue) (2012)
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 39 (Database-Issue) (2011)
Leonardo Mariño-Ramírez, Kevin M. Levine, Mario Morales, Suiyuan Zhang, Travis Moreland, Andreas D. Baxevanis, David Landsman
The Histone Database: an integrated resource for histones and histone fold-containing proteins. Database J. Biol. Databases Curation 2011 (2011)
Allegra Via, Javier De Las Rivas, Teresa K. Attwood, David Landsman, Michelle D. Brazas, Jack A. M. Leunissen, Anna Tramontano, Maria Victoria Schneider
Ten Simple Rules for Developing a Short Bioinformatics Training Course. PLoS Comput. Biol. 7 (10) (2011)
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
Towards BioDBcore: a community-defined information specification for biological databases. Database J. Biol. Databases Curation 2011 (2011)
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39 (Database-Issue) (2011)
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 38 (Database-Issue) (2010)
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko, Jian Ye
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 37 (Database-Issue) (2009)
David Landsman, Robert Gentleman, Janet Kelso, B. F. Francis Ouellette
: A new forum for biological databases and curation. Database J. Biol. Databases Curation 2009 (2009)
David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, Oleg Khovayko, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Martin Shumway, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 36 (Database-Issue) (2008)
David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Yuri Kapustin, Oleg Khovayko, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Vadim Miller, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 35 (Database-Issue) (2007)
Kannan Tharakaraman, Leonardo Mariño-Ramírez, Sergey Sheetlin, David Landsman, John L. Spouge
Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements. BMC Bioinform. 7 (2006)
Kannan Tharakaraman, Leonardo Mariño-Ramírez, Sergey Sheetlin, David Landsman, John L. Spouge
Alignments anchored on genomic landmarks can aid in the identification of regulatory elements. ISMB (Supplement of Bioinformatics) (2005)
Steven A. Sullivan, Daniel W. Sink, Kenneth L. Trout, Izabela Makalowska, Patrick M. Taylor, Andreas D. Baxevanis, David Landsman
The Histone Database. Nucleic Acids Res. 30 (1) (2002)
Steven A. Sullivan, L. Aravind, Izabela Makalowska, Andreas D. Baxevanis, David Landsman
The Histone Database: a comprehensive WWW resource for histones and histone fold-containing proteins. Nucleic Acids Res. 28 (1) (2000)
Sharmila Banerjee-Basu, David Landsman, Andreas D. Baxevanis
Homology model building of prospero-type homeodomains. Silico Biol. 1 (3) (1999)
Andrei E. Gabrielian, David Landsman, Alexander Bolshoy
Curved DNA in promoter sequences. Silico Biol. 1 (4) (1999)
Izabela Makalowska, Erik S. Ferlanti, Andreas D. Baxevanis, David Landsman
Histone Sequence Database: sequences, structures, post-translational modifications and genetic loci. Nucleic Acids Res. 27 (1) (1999)
Sonia M. Leach, Lawrence Hunter, David Landsman
Comparison of Clustering Metrics and Unsupervised Learning Algorithms on Genome-Wide Gene Expression Level Data. AAAI/IAAI (1999)
Andreas D. Baxevanis, David Landsman
Homology model building of Hho1p supports its role as a yeast histone H1 protein. Silico Biol. 1 (1) (1998)
Andreas D. Baxevanis, David Landsman
Histone Sequence Database: new histone fold family members. Nucleic Acids Res. 26 (1) (1998)
Andreas D. Baxevanis, David Landsman
Histone and histone fold sequences and structures: a database. Nucleic Acids Res. 25 (1) (1997)
Andreas D. Baxevanis, David Landsman
Histone Sequence Database: a compilation of highly-conserved nucleoprotein sequences. Nucleic Acids Res. 24 (1) (1996)