Ivan Ovcharenko

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 3

Top Topics

Receptive Fields

Regulatory Elements

Gene Expression Time Series

Top Venues

Publications

Christopher Hill, Sanjarbek Hudaiberdiev, Ivan Ovcharenko
ChromDL: a next-generation regulatory DNA classifier. Bioinform. 39 (Supplement-1) (2023)
Roberto Vera Alvarez, Shan Li, David Landsman, Ivan Ovcharenko
SNPDelScore: combining multiple methods to score deleterious effects of noncoding mutations in the human genome. Bioinform. 34 (2) (2018)
Mario A. Flores, Ivan Ovcharenko
Enhancer reprogramming in mammalian genomes. BMC Bioinform. 19 (1) (2018)
Hani Z. Girgis, Ivan Ovcharenko
Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs. BMC Bioinform. 13 (2012)
Leila Taher, Leelavati Narlikar, Ivan Ovcharenko
CLARE: Cracking the LAnguage of Regulatory Elements. Bioinform. 28 (4) (2012)
Ivan Ovcharenko
Structure of Proximal and Distant Regulatory Elements in the Human Genome. ISBRA (2010)
Leila Taher, Ivan Ovcharenko
Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements. Bioinform. 25 (5) (2009)
Valer Gotea, Ivan Ovcharenko
DiRE: identifying distant regulatory elements of co-expressed genes. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Gabriela G. Loots, Ivan Ovcharenko
ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes. Bioinform. 23 (1) (2007)
Gabriela G. Loots, Patrick S. G. Chain, Shalini Mabery, Amy Rasley, Emilio Garcia, Ivan Ovcharenko
Array2BIO: from microarray expression data to functional annotation of co-regulated genes. BMC Bioinform. 7 (2006)
Gabriela G. Loots, Ivan Ovcharenko
Dcode.org anthology of comparative genomic tools. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Ivan Ovcharenko, Marcelo A. Nobrega
Identifying synonymous regulatory elements in vertebrate genomes. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Roded Sharan, Asa Ben-Hur, Gabriela G. Loots, Ivan Ovcharenko
CREME: Cis-Regulatory Module Explorer for the human genome. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Ivan Ovcharenko, Marcelo A. Nobrega, Gabriela G. Loots, Lisa Stubbs
ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Gabriela G. Loots, Ivan Ovcharenko
rVISTA 2.0: evolutionary analysis of transcription factor binding sites. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Roded Sharan, Ivan Ovcharenko, Asa Ben-Hur, Richard M. Karp
CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments. ISMB (Supplement of Bioinformatics) (2003)