Javier De Las Rivas

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 15

Top Topics

Systems Biology

Protein Structural

Molecular Interactions

Top Venues

Briefings Bioinform.

PLoS Comput. Biol.

Publications

Benjamin L. Moore, Patricia Carvajal López, Paballo Abel Chauke, Marco Cristancho, Victoria Dominguez Del Angel, Selene L. Fernandez-Valverde, Amel Ghouila, Piraveen Gopalasingam, Fatma Zahra Guerfali, Alice Matimba, Sarah L. Morgan, Guilherme Oliveira, Verena Ras, Alejandro Reyes, Javier De Las Rivas, Nicola J. Mulder
Correction: Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries. PLoS Comput. Biol. 18 (5) (2022)
Benjamin L. Moore, Patricia Carvajal López, Paballo Abel Chauke, Marco Cristancho, Victoria Dominguez Del Angel, Selene L. Fernandez-Valverde, Amel Ghouila, Piraveen Gopalasingam, Fatma Zahra Guerfali, Alice Matimba, Sarah L. Morgan, Guilherme Oliveira, Verena Ras, Alejandro Reyes, Javier De Las Rivas, Nicola J. Mulder
Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries. PLoS Comput. Biol. 17 (8) (2021)
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoît Charloteaux, Dong-Sic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon-gang Choi, Claudia Colabella, Georges Coppin, Cassandra D'Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Tasan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
A reference map of the human binary protein interactome. Nat. 580 (7803) (2020)
Diego Alonso-López, Francisco J. Campos-Laborie, Miguel A. Gutiérrez, Luke Lambourne, Michael A. Calderwood, Marc Vidal, Javier De Las Rivas
APID database: redefining protein-protein interaction experimental evidences and binary interactomes. Database J. Biol. Databases Curation 2019 (2019)
Francisco J. Campos-Laborie, Alberto Risueño, M. Ortiz-Estévez, B. Rosón-Burgo, Conrad Droste, Celia Fontanillo, Remco Loos, J. M. Sánchez-Santos, Matthew W. B. Trotter, Javier De Las Rivas
DECO: decompose heterogeneous population cohorts for patient stratification and discovery of sample biomarkers using omic data profiling. Bioinform. 35 (19) (2019)
Javier De Las Rivas, César Bonavides-Martínez, Francisco Jose Campos-Laborie
Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures. Briefings Bioinform. 20 (2) (2019)
M. Sivade Dumousseau, Maximilian Koch, Anjali Shrivastava, Diego Alonso-López, Javier De Las Rivas, Noemi del-Toro, Colin W. Combe, Birgit H. M. Meldal, Joshua Heimbach, Juri Rappsilber, Julie M. Sullivan, Yo Yehudi, Sandra E. Orchard
JAMI: a Java library for molecular interactions and data interoperability. BMC Bioinform. 19 (1) (2018)
M. Sivade Dumousseau, Diego Alonso-López, Mais G. Ammari, Glyn Bradley, Nancy H. Campbell, Arnaud Céol, Gianni Cesareni, Colin W. Combe, Javier De Las Rivas, Noemi del-Toro, Joshua Heimbach, Henning Hermjakob, Igor Jurisica, Maximilian Koch, Luana Licata, Ruth C. Lovering, David J. Lynn, Birgit H. M. Meldal, Gos Micklem, Simona Panni, Pablo Porras, Sylvie Ricard-Blum, Bernd Roechert, Lukasz Salwínski, Anjali Shrivastava, Julie M. Sullivan, Nicolas Thierry-Mieg, Yo Yehudi, Kim Van Roey, Sandra E. Orchard
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. BMC Bioinform. 19 (1) (2018)
Bruno A. Gaëta, Javier De Las Rivas, Paul Horton, Pieter Meysman, Nicola J. Mulder, Paolo Romano, Lonnie R. Welch
Ten simple rules for forming a scientific professional society. PLoS Comput. Biol. 13 (3) (2017)
Javier De Las Rivas, César Bonavides-Martínez, Francisco J. Campos-Laborie
Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures. Briefings Bioinform. 18 (6) (2017)
Diego Alonso-López, Miguel A. Gutiérrez, Katia P. Lopes, Carlos Prieto, Rodrigo Santamaría, Javier De Las Rivas
APID interactomes: providing proteome-based interactomes with controlled quality for multiple species and derived networks. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Gustavo Santos-García, Carolyn L. Talcott, Adrián Riesco, Beatriz Santos-Buitrago, Javier De Las Rivas
Role of Nerve Growth Factor Signaling in Cancer Cell Proliferation and Survival Using a Reachability Analysis Approach. PACBB (2016)
Sara Aibar, María Abáigar, Francisco J. Campos-Laborie, Jose Manuel Sánchez-Santos, Jesus M. Hernandez-Rivas, Javier De Las Rivas
Identification of expression patterns in the progression of disease stages by integration of transcriptomic data. BMC Bioinform. 17 (1) (2016)
Sara Aibar, Celia Fontanillo, Conrad Droste, Javier De Las Rivas
Functional Gene Networks: R/Bioc package to generate and analyse gene networks derived from functional enrichment and clustering. Bioinform. 31 (10) (2015)
Gustavo Santos-García, Carolyn L. Talcott, Javier De Las Rivas
Analysis of Cellular Proliferation and Survival Signaling by Using Two Ligand/Receptor Systems Modeled by Pathway Logic. HSB (2015)
Gustavo Santos-García, Javier De Las Rivas, Carolyn L. Talcott
A Logic Computational Framework to Query Dynamics on Complex Biological Pathways. PACBB (2014)
Gustavo Santos-García, Javier De Las Rivas, Carolyn L. Talcott
Rewriting Logic and Symbolic Systems Biology applied to EGF Signaling Pathway. IWBBIO (2014)
Rafael C. Jimenez, Juan P. Albar, Jong Bhak, Marie-Claude Blatter, Thomas Blicher, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Marc A. van Driel, Michael J. Dunn, Pedro L. Fernandes, Celia W. G. van Gelder, Henning Hermjakob, Vassilios Ioannidis, David Phillip Judge, Pascal Kahlem, Eija Korpelainen, Hans-Joachim Kraus, Jane E. Loveland, Christine Mayer, Jennifer McDowall, Federico Morán, Nicola J. Mulder, Tommi H. Nyrönen, Kristian Rother, Gustavo A. Salazar, Reinhard Schneider, Allegra Via, Jose M. Villaveces, Ping Yu, Maria Victoria Schneider, Teresa K. Attwood, Manuel Corpas
iAnn: an event sharing platform for the life sciences. Bioinform. 29 (15) (2013)
Allegra Via, Thomas Blicher, Erik Bongcam-Rudloff, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Pedro L. Fernandes, Celia W. G. van Gelder, Joachim Jacob, Rafael C. Jimenez, Jane E. Loveland, Federico Morán, Nicola J. Mulder, Tommi H. Nyrönen, Kristian Rother, Maria Victoria Schneider, Teresa K. Attwood
Best practices in bioinformatics training for life scientists. Briefings Bioinform. 14 (5) (2013)
Federica Eduati, Javier De Las Rivas, Barbara Di Camillo, Gianna Toffolo, Julio Saez-Rodriguez
Integrating literature-constrained and data-driven inference of signalling networks. Bioinform. 28 (18) (2012)
Maria Victoria Schneider, Peter Walter, Marie-Claude Blatter, James Watson, Michelle D. Brazas, Kristian Rother, Aidan Budd, Allegra Via, Celia W. G. van Gelder, Joachim Jacob, Pedro L. Fernandes, Tommi H. Nyrönen, Javier De Las Rivas, Thomas Blicher, Rafael C. Jimenez, Jane E. Loveland, Jennifer McDowall, Philip Jones, Brendan W. Vaughan, Rodrigo Lopez, Teresa K. Attwood, Catherine Brooksbank
Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers. Briefings Bioinform. 13 (3) (2012)
Allegra Via, Javier De Las Rivas, Teresa K. Attwood, David Landsman, Michelle D. Brazas, Jack A. M. Leunissen, Anna Tramontano, Maria Victoria Schneider
Ten Simple Rules for Developing a Short Bioinformatics Training Course. PLoS Comput. Biol. 7 (10) (2011)
Alberto Risueño, Celia Fontanillo, Marcel E. Dinger, Javier De Las Rivas
GATExplorer: Genomic and Transcriptomic Explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs. BMC Bioinform. 11 (2010)
Maria Victoria Schneider, James Watson, Teresa K. Attwood, Kristian Rother, Aidan Budd, Jennifer McDowall, Allegra Via, Pedro L. Fernandes, Tommi H. Nyrönen, Thomas Blicher, Philip Jones, Marie-Claude Blatter, Javier De Las Rivas, David Phillip Judge, Wouter van der Gool, Catherine Brooksbank
Bioinformatics training: a review of challenges, actions and support requirements. Briefings Bioinform. 11 (6) (2010)
Javier De Las Rivas, Celia Fontanillo
Protein-Protein Interactions Essentials: Key Concepts to Building and Analyzing Interactome Networks. PLoS Comput. Biol. 6 (6) (2010)
Manuel Martín-Merino, Javier De Las Rivas
Improving k-NN for Human Cancer Classification Using the Gene Expression Profiles. IDA (2009)
Manuel Martín-Merino, Javier De Las Rivas
-NN for Human Cancer Classification Using the Gene Expression Profiles. ICANN (2) (2009)
Ángela Blanco, Manuel Martín-Merino, Javier De Las Rivas
Classification of multiple cancer types in a Hyper Reproducing Kernel Hilbert Space. BIBE (2008)
Ángela Blanco, Manuel Martín-Merino, Javier De Las Rivas
Combining Dissimilarities in a Hyper Reproducing Kernel Hilbert Space for Complex Human Cancer Prediction. ICMLA (2008)
Ángela Blanco, Manuel Martín-Merino, Javier De Las Rivas
Combining dissimilarity based classifiers for cancer prediction using gene expression profiles. BMC Bioinform. 8 (S-8) (2007)
Juan Hernandez-Toro, Carlos Prieto, Javier De Las Rivas
APID2NET: unified interactome graphic analyzer. Bioinform. 23 (18) (2007)
César L. Avila, Viviana A. Rapisarda, Ricardo N. Farías, Javier De Las Rivas, Rosana Chehín
Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide reductases. BMC Bioinform. 8 (2007)
Ángela Blanco, Manuel Martín-Merino, Javier De Las Rivas
Ensemble of Dissimilarity Based Classifiers for Cancerous Samples Classification. PRIB (2007)
Ángela Blanco, Manuel Martín-Merino, Javier De Las Rivas
On the Combination of Dissimilarities for Gene Expression Data Analysis. ICANN (2) (2007)
Ángela Blanco, Manuel Martín-Merino, Javier De Las Rivas
Ensemble of Kernel Based Classifiers to Improve the Human Cancer Prediction using DNA Microarrays. BIBE (2007)
Carlos Prieto, Javier De Las Rivas
APID: Agile Protein Interaction DataAnalyzer. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Carlos Prieto, M. J. Rivas, J. M. Sánchez, J. López-Fidalgo, Javier De Las Rivas
Algorithm to find gene expression profiles of deregulation and identify families of disease-altered genes. Bioinform. 22 (9) (2006)
Alberto de Luis, Javier De Las Rivas
Investigating the Assignment of Probes to Transcripts in Affymetrix Microarrays. Spanish Bioinformatics Conference (2004)
Carlos Prieto, Alberto de Luis, Javier De Las Rivas
Integration and Comparison of Interactome Databases. Spanish Bioinformatics Conference (2004)