Anna Tramontano

Publication Activity (10 Years)

Years Active: 1986-2017
Publications (10 Years): 6

Top Topics

Protein Structural

Prediction Algorithm

Top Venues

Nucleic Acids Res.

Comput. Biol. Chem.

Publications

Rosalba Lepore, Pier Paolo Olimpieri, Mario Abdel Messih, Anna Tramontano
PIGSPro: prediction of immunoGlobulin structures v2. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Agnieszka Obarska-Kosinska, Alfredo Iacoangeli, Rosalba Lepore, Anna Tramontano
PepComposer: computational design of peptides binding to a given protein surface. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Edoardo Milanetti, Domenico Raimondo, Anna Tramontano
Prediction of the permeability of neutral drugs inferred from their solvation properties. Bioinform. 32 (8) (2016)
Mario Abdel Messih, Rosalba Lepore, Anna Tramontano
LoopIng: a template-based tool for predicting the structure of protein loops. Bioinform. 31 (23) (2015)
Loredana Le Pera, Mariagiovanna Mazzapioda, Anna Tramontano
3USS: a web server for detecting alternative 3′UTRs from RNA-seq experiments. Bioinform. 31 (11) (2015)
Pier Paolo Olimpieri, Paolo Marcatili, Anna Tramontano
Tabhu: tools for antibody humanization. Bioinform. 31 (3) (2015)
Mario Abdel Messih, Rosalba Lepore, Paolo Marcatili, Anna Tramontano
Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies. Bioinform. 30 (19) (2014)
Daniel D'Andrea, Luigi Grassi, Mariagiovanna Mazzapioda, Anna Tramontano
FIDEA: a server for the functional interpretation of differential expression analysis. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Pier Paolo Olimpieri, Anna Chailyan, Anna Tramontano, Paolo Marcatili
Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server. Bioinform. 29 (18) (2013)
Jan Kosinski, Alessandro Barbato, Anna Tramontano
MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships. Bioinform. 29 (7) (2013)
Rosalba Lepore, Anna Tramontano, Allegra Via
TiPs: a database of therapeutic targets in pathogens and associated tools. Bioinform. 29 (14) (2013)
Silvia Bottini, Andrea Bernini, Matteo De Chiara, Diego Garlaschelli, Ottavia Spiga, Marco Dioguardi, Elisa Vannuccini, Anna Tramontano, Neri Niccolai
ProCoCoA: A quantitative approach for analyzing protein core composition. Comput. Biol. Chem. 43 (2013)
Alessandro Barbato, Pascal Benkert, Torsten Schwede, Anna Tramontano, Jan Kosinski
Improving your target-template alignment with MODalign. Bioinform. 28 (7) (2012)
Anna Chailyan, Anna Tramontano, Paolo Marcatili
A database of immunoglobulins with integrated tools: DIGIT. Nucleic Acids Res. 40 (Database-Issue) (2012)
Daniel Carbajo, Anna Tramontano
A resource for benchmarking the usefulness of protein structure models. BMC Bioinform. 13 (2012)
Matteo Floris, Domenico Raimondo, Guido Leoni, Massimiliano Orsini, Paolo Marcatili, Anna Tramontano
MAISTAS: a tool for automatic structural evaluation of alternative splicing products. Bioinform. 27 (12) (2011)
Allegra Via, Javier De Las Rivas, Teresa K. Attwood, David Landsman, Michelle D. Brazas, Jack A. M. Leunissen, Anna Tramontano, Maria Victoria Schneider
Ten Simple Rules for Developing a Short Bioinformatics Training Course. PLoS Comput. Biol. 7 (10) (2011)
Rosalba Lepore, Silvia Simeoni, Domenico Raimondo, Antonia Caroli, Anna Tramontano, Allegra Via
Identification of the Schistosoma mansoni Molecular Target for the Antimalarial Drug Artemether. J. Chem. Inf. Model. 51 (11) (2011)
Andreas Zanzoni, Daniel Carbajo, Francesca Diella, Pier Federico Gherardini, Anna Tramontano, Manuela Helmer-Citterich, Allegra Via
Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites. Nucleic Acids Res. 39 (Database-Issue) (2011)
Anna Chailyan, Davide Cirillo, Paolo Marcatili, Anna Tramontano
Structural landscape of immunoglobulin lambda light chains. BCB (2010)
Emanuela Giombini, Massimiliano Orsini, Danilo Carrabino, Anna Tramontano
An automatic method for identifying surface proteins in bacteria: SLEP. BMC Bioinform. 11 (2010)
Loredana Le Pera, Paolo Marcatili, Anna Tramontano
PICMI: mapping point mutations on genomes. Bioinform. 26 (22) (2010)
Dan Gusfield, Anna Tramontano
Editorial. Bioinform. 25 (12) (2009)
Paolo Marcatili, Giovanni Bussotti, Anna Tramontano
The MoVIN server for the analysis of protein interaction networks. BMC Bioinform. 9 (S-2) (2008)
Gabriele Ausiello, Pier Federico Gherardini, Paolo Marcatili, Anna Tramontano, Allegra Via, Manuela Helmer-Citterich
FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures. BMC Bioinform. 9 (S-2) (2008)
Paolo Marcatili, Alessandra Rosi, Anna Tramontano
PIGS: automatic prediction of antibody structures. Bioinform. 24 (17) (2008)
Anna Tramontano
Editorial. ECCB (2008)
Tiziana Castrignanò, Paolo D'Onorio De Meo, Danilo Carrabino, Massimiliano Orsini, Matteo Floris, Anna Tramontano
The MEPS server for identifying protein conformational epitopes. BMC Bioinform. 8 (S-1) (2007)
Tiziana Castrignanò, Paolo D'Onorio De Meo, Domenico Cozzetto, Ivano Giuseppe Talamo, Anna Tramontano
The PMDB Protein Model Database. Nucleic Acids Res. 34 (Database-Issue) (2006)
Michael L. Tress, Domenico Cozzetto, Anna Tramontano, Alfonso Valencia
An analysis of the Sargasso Sea resource and the consequences for database composition. BMC Bioinform. 7 (2006)
Marialuisa Pellegrini-Calace, Anna Tramontano
Identification of a novel putative mitogen-activated kinase cascade on human chromosome 21 by computational approaches. Bioinform. 22 (7) (2006)
Alejandro Giorgetti, Domenico Raimondo, Adriana Erica Miele, Anna Tramontano
Evaluating the usefulness of protein structure models for molecular replacement. ECCB/JBI (2005)
Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vasilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis
Evaluation of annotation strategies using an entire genome sequence. Bioinform. 19 (6) (2003)
Anna Tramontano, M. F. Macchiato
Probability of coding of a DNA sequence: an algorithm to predict translated reading frames from their thermodynamic characteristics. Nucleic Acids Res. 14 (1) (1986)