Vasilis J. Promponas

Publication Activity (10 Years)

Years Active: 1998-2023
Publications (10 Years): 10

Top Topics

Redescription Mining

Protein Sequences

Computational Biology

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

PLoS Comput. Biol.

Publications

Dimitrios Vasileiou, Christos Karapiperis, Ismini Baltsavia, Anastasia Chasapi, Dag G. Ahrén, Paul J. Janssen, Ioannis Iliopoulos, Vasilis J. Promponas, Anton J. Enright, Christos A. Ouzounis
CGG toolkit: Software components for computational genomics. PLoS Comput. Biol. 19 (11) (2023)
Federica Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E. Davey, Radoslav Davidovic, Laszlo Dobson, Arne Elofsson, Gábor Erdös, Pascale Gaudet, Michelle G. Giglio, Juliana Glavina, Javier Iserte, Valentín Iglesias, Zsófia L. Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino Buslje, Attila Meszaros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F. Nilsson, Marián Novotný, Christos A. Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro J. Barbosa Pereira, Gabriele Pozzati, Vasilis J. Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Éva Schád, Aditi Shenoy, Tamás Szaniszló, Konstantinos D. Tsirigos, Nevena Veljkovic, Gustavo D. Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic Acids Res. 50 (D1) (2022)
Konstantinos Charalampous, Michalis Agathocleous, Chris Christodoulou, Vasilis J. Promponas
Solving the Protein Secondary Structure Prediction Problem With the Hessian Free Optimization Algorithm. IEEE Access 10 (2022)
Anastasia Chasapi, Vasilis J. Promponas, Christos A. Ouzounis
The bioinformatics wealth of nations. Bioinform. 36 (9) (2020)
Pablo Mier, Lisanna Paladin, Stella Tamana, Sophia Petrosian, Borbála Hajdu-Soltész, Annika Urbanek, Aleksandra Gruca, Dariusz Plewczynski, Marcin Grynberg, Pau Bernadó, Zoltán Gáspári, Christos A. Ouzounis, Vasilis J. Promponas, Andrey V. Kajava, John M. Hancock, Silvio C. E. Tosatto, Zsuzsanna Dosztányi, Miguel A. Andrade-Navarro
Disentangling the complexity of low complexity proteins. Briefings Bioinform. 21 (2) (2020)
Patryk Jarnot, Joanna Ziemska-Legiecka, Laszlo Dobson, Matthew Merski, Pablo Mier, Miguel A. Andrade-Navarro, John M. Hancock, Zsuzsanna Dosztányi, Lisanna Paladin, Marco Necci, Damiano Piovesan, Silvio C. E. Tosatto, Vasilis J. Promponas, Marcin Grynberg, Aleksandra Gruca
PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan
DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res. 48 (Database-Issue) (2020)
Anastasia Chasapi, Michalis Aivaliotis, Lefteris Angelis, Anastasios Chanalaris, Ioannis Iliopoulos, Ilias Kappas, Christos Karapiperis, Nikos Kyrpides, Evangelos Pafilis, Eleftherios Panteris, Pantelis Topalis, George Tsiamis, Ioannis S. Vizirianakis, Metaxia Vlassi, Vasilis J. Promponas, Christos A. Ouzounis
Establishment of computational biology in Greece and Cyprus: Past, present, and future. PLoS Comput. Biol. 15 (12) (2019)
Antreas Dionysiou, Michalis Agathocleous, Chris Christodoulou, Vasilis J. Promponas
Convolutional Neural Networks in Combination with Support Vector Machines for Complex Sequential Data Classification. ICANN (2) (2018)
Michalis Agathocleous, Chris Christodoulou, Vasilis J. Promponas, Petros Kountouris, Vassilis Vassiliades
Training Bidirectional Recurrent Neural Network Architectures with the Scaled Conjugate Gradient Algorithm. ICANN (1) (2016)
Ioannis Kirmitzoglou, Vasilis J. Promponas
LCR-eXXXplorer: a web platform to search, visualize and share data for low complexity regions in protein sequences. Bioinform. 31 (13) (2015)
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 31 (6) (2015)
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos
: a knowledge integration platform for literature mining and concept discovery. Bioinform. 30 (22) (2014)
Vasilis J. Promponas, Christos A. Ouzounis, Ioannis Iliopoulos
Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey. Briefings Bioinform. 15 (3) (2014)
Grigorios Chrysos, Euripides Sotiriades, Christos Rousopoulos, K. Pramataris, Ioannis Papaefstathiou, Apostolos Dollas, Agathoklis Papadopoulos, Ioannis Kirmitzoglou, Vasilis J. Promponas, Theo Theocharides, George Petihakis, Jacques Lagnel
Reconfiguring the Bioinformatics Computational Spectrum: Challenges and Opportunities of FPGA-Based Bioinformatics Acceleration Platforms. IEEE Des. Test 31 (1) (2014)
Manolis Tsiknakis, Vasilis J. Promponas, Norbert M. Graf, May D. Wang, Stephen T. C. Wong, Nikolaos G. Bourbakis, Constantinos S. Pattichis
Guest Editorial: Computational Solutions to Large-Scale Data Management and Analysis in Translational and Personalized Medicine. IEEE J. Biomed. Health Informatics 18 (3) (2014)
Efthyvoulos C. Kyriacou, Vasilis J. Promponas, Ilias Maglogiannis, Christos N. Schizas, Constantinos S. Pattichis
Editorial: Intelligent Biomedical Systems. Int. J. Artif. Intell. Tools 23 (3) (2014)
Agathoklis Papadopoulos, Ioannis Kirmitzoglou, Vasilis J. Promponas, Theocharis Theocharides
GPU technology as a platform for accelerating local complexity analysis of protein sequences. EMBC (2013)
Agathoklis Papadopoulos, Ioannis Kirmitzoglou, Vasilis J. Promponas, Theocharis Theocharides
FPGA-based hardware acceleration for local complexity analysis of massive genomic data. Integr. 46 (3) (2013)
Kleo G. Achilleos, Christos C. Kannas, Christos A. Nicolaou, Constantinos S. Pattichis, Vasilis J. Promponas
Open source workflow systems in life sciences informatics. BIBE (2012)
Agathoklis Papadopoulos, Vasilis J. Promponas, Theocharis Theocharides
Towards systolic hardware acceleration for local complexity analysis of massive genomic data. ACM Great Lakes Symposium on VLSI (2012)
Grigorios Chrysos, Euripides Sotiriades, Christos Rousopoulos, Apostolos Dollas, Agathoklis Papadopoulos, Ioannis Kirmitzoglou, Vasilis J. Promponas, Theocharis Theocharides, George Petihakis, Jacques Lagnel, Panagiotis Vavylis, George Kotoulas
Opportunities from the use of FPGAs as platforms for bioinformatics algorithms. BIBE (2012)
Stella Tamana, Ioannis Kirmitzoglou, Vasilis J. Promponas
Sequence features of Compositionally Biased regions in three dimensional protein structures. BIBE (2012)
Athina Theodosiou, Vasilis J. Promponas
LaTcOm: a web server for visualizing rare codon clusters in coding sequences. Bioinform. 28 (4) (2012)
Petros Kountouris, Michalis Agathocleous, Vasilis J. Promponas, Georgia Christodoulou, Simos Hadjicostas, Vassilis Vassiliades, Chris Christodoulou
A Comparative Study on Filtering Protein Secondary Structure Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (3) (2012)
Christos C. Kannas, Kleo G. Achilleos, Zinonas C. Antoniou, Christos A. Nicolaou, Constantinos S. Pattichis, Ioanna Kalvari, Ioannis Kirmitzoglou, Vasilis J. Promponas
A workflow system for virtual screening in cancer chemoprevention. BIBE (2012)
Nikolas Papanikolaou, Evangelos Pafilis, Stavros Nikolaou, Christos A. Ouzounis, Ioannis Iliopoulos, Vasilis J. Promponas
BioTextQuest: a web-based biomedical text mining suite for concept discovery. Bioinform. 27 (23) (2011)
Alexis Ioannou, Konstantinos Fokianos, Vasilis J. Promponas
Spectral density ratio based clustering methods for the binary segmentation of protein sequences: A comparative study. Biosyst. 100 (2) (2010)
Michalis Agathocleous, Georgia Christodoulou, Vasilis J. Promponas, Chris Christodoulou, Vassilis Vassiliades, Antonis Antoniou
Protein Secondary Structure Prediction with Bidirectional Recurrent Neural Nets: Can Weight Updating for Each Residue Enhance Performance? AIAI (2010)
Alexios Savvides, Vasilis J. Promponas, Konstantinos Fokianos
Clustering of biological time series by cepstral coefficients based distances. Pattern Recognit. 41 (7) (2008)
Panagiotis K. Papasaikas, Pantelis G. Bagos, Zoi I. Litou, Vasilis J. Promponas, Stavros J. Hamodrakas
PRED-GPCR: GPCR recognition and family classification server. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Georgios S. Vernikos, Christos G. Gkogkas, Vasilis J. Promponas, Stavros J. Hamodrakas
GeneViTo: Visualizing gene-product functional and structural features in genomic datasets. BMC Bioinform. 4 (2003)
Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vasilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis
Evaluation of annotation strategies using an entire genome sequence. Bioinform. 19 (6) (2003)
Vasilis J. Promponas, Anton J. Enright, Sophia Tsoka, David P. Kreil, Christophe Leroy, Stavros J. Hamodrakas, Chris Sander, Christos A. Ouzounis
CAST: an iterative algorithm for the complexity analysis of sequence tracts. Bioinform. 16 (10) (2000)
C. M. Pasquier, Vasilis J. Promponas, N. J. Varvayannis, Stavros J. Hamodrakas
A web server to locate periodicities in a sequence. Bioinform. 14 (8) (1998)
Vasilis J. Promponas, G. A. Palaios, C. M. Pasquier, J. S. Hamodrakas, Stavros J. Hamodrakas
CoPreTHi: A Web tool which combines transmembrane protein segment prediction methods. Silico Biol. 1 (3) (1998)