Venkata P. Satagopam

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 21

Top Topics

Knowledge Integration

Semantic Technologies

Protein Structure And Function

Computational Biology

Top Venues

Frontiers Bioinform.

Publications

Carlos Vega, Marek Ostaszewski, Valentin Grouès, Reinhard Schneider, Venkata P. Satagopam
BioKC: a collaborative platform for curation and annotation of molecular interactions. Database J. Biol. Databases Curation 2024 (2024)
Dagmar Waltemath, Esther Thea Inau, Lea Michaelis, Venkata P. Satagopam, Irina Balaur
Experiences From FAIRifying Community Data and FAIR Infrastructure in Biomedical Research Domains. CoRDI (2023)
Wei Gu, Christophe Trefois, Pinar Alper, Danielle Welter, Yohan Jarosz, Jacek Lebioda, Linda Ebermann, Regina Becker, Venkata P. Satagopam, Reinhard Schneider, Bert Verdonck
RDM Services at the Luxembourg National Data Service. CoRDI (2023)
Piotr Gawron, David Hoksza, Janet Piñero, María Peña-Chilet, Marina Esteban-Medina, Jose Luis Fernandez-Rueda, Vincenza Colonna, Ewa Smula, Laurent Heirendt, François Ancien, Valentin Grouès, Venkata P. Satagopam, Reinhard Schneider, Joaquín Dopazo, Laura I. Furlong, Marek Ostaszewski
Visualization of automatically combined disease maps and pathway diagrams for rare diseases. Frontiers Bioinform. 3 (2023)
Alexander Mazein, Marcio Luis Acencio, Irina Balaur, Adrien Rougny, Danielle Welter, Anna Niarakis, Diana Ramirez Ardila, Ugur Dogrusoz, Piotr Gawron, Venkata P. Satagopam, Wei Gu, Andreas Kremer, Reinhard Schneider, Marek Ostaszewski
A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance. Frontiers Bioinform. 3 (2023)
Carlos Vega, Reinhard Schneider, Venkata P. Satagopam
Analysis: Flawed Datasets of Monkeypox Skin Images. J. Medical Syst. 47 (1) (2023)
Valentin Grouès, Carlos Vega, Venkata P. Satagopam
A formalization of one of the main claims of "Mutations in STX1B, encoding a presynaptic protein, cause fever-associated epilepsy syndromes" by Schubert et al. 20141. Data Sci. 5 (1) (2022)
Miroslav Kratochvíl, Laurent Heirendt, St Elmo Wilken, Taneli Pusa, Sylvain Arreckx, Alberto Noronha, Marvin van Aalst, Venkata P. Satagopam, Oliver Ebenhöh, Reinhard Schneider, Christophe Trefois, Wei Gu
COBREXA.jl: constraint-based reconstruction and exascale analysis. Bioinform. 38 (4) (2022)
Carlos Vega, Miroslav Kratochvíl, Venkata P. Satagopam, Reinhard Schneider
Translational Challenges of Biomedical Machine Learning Solutions in Clinical and Laboratory Settings. IWBBIO (2) (2022)
Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost
PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Adriano Barbosa-Silva, Dorina Bratfalean, Wei Gu, Venkata P. Satagopam, Paul Houston, Lauren B. Becnel, Serge Eifes, Fabien Richard, Andreas Tielmann, Sascha Herzinger, Kavita Rege, Rudi Balling, Paul Peeters
Presenting and sharing clinical data using the eTRIKS Standards Master Tree for tranSMART. Bioinform. 35 (9) (2019)
Wei Gu, Reha Yildirimman, Emmanuel Van der Stuyft, Denny Verbeeck, Sascha Herzinger, Venkata P. Satagopam, Adriano Barbosa-Silva, Reinhard Schneider, Bodo M. H. Lange, Hans Lehrach, Yike Guo, David Henderson, Anthony Rowe
Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium. BMC Bioinform. 20 (1) (2019)
Pinar Alper, Regina Becker, Venkata P. Satagopam, Christophe Trefois, Valentin Grouès, Jacek Lebioda, Yohan Jarosz
Provenance-Enabled Stewardship of Human Data in the GDPR Era. IPAW (2018)
Anupama Jigisha, Margherita Francescatto, Farzana Rahman, Nazeefa Fatima, Dan F. DeBlasio, Avinash Kumar Shanmugam, Venkata P. Satagopam, Alberto Santos, Pandurang Kolekar, Magali Michaut, Emre Guney
The ISCB Student Council Internship Program: Expanding computational biology capacity worldwide. PLoS Comput. Biol. 14 (1) (2018)
Sascha Herzinger, Wei Gu, Venkata P. Satagopam, Serge Eifes, Kavita Rege, Adriano Barbosa-Silva, Reinhard Schneider
SmartR: an open-source platform for interactive visual analytics for translational research data. Bioinform. 33 (14) (2017)
Juan Miguel Cejuela, Aleksandar Bojchevski, Carsten Uhlig, Rustem Bekmukhametov, Sanjeev Kumar Karn, Shpend Mahmuti, Ashish Baghudana, Ankit Dubey, Venkata P. Satagopam, Burkhard Rost
nala: text mining natural language mutation mentions. Bioinform. 33 (12) (2017)
Laurent Heirendt, Sylvain Arreckx, Christophe Trefois, Yohan Yarosz, Maharshi Vyas, Venkata P. Satagopam, Reinhard Schneider, Ines Thiele, Ronan M. T. Fleming
ARTENOLIS: Automated Reproducibility and Testing Environment for Licensed Software. CoRR (2017)
Merlijn N. van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-García, Rafael C. Jimenez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Nicholas K. Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata P. Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck
The future of metabolomics in ELIXIR. F1000Research 6 (2017)
Maria Biryukov, Valentin Grouès, Venkata P. Satagopam
BioKB - Text mining and semantic technologies for the biomedical content discovery. SWAT4LS (2017)
Valentin Grouès, Maria Biryukov, Christophe Trefois, Venkata P. Satagopam
Semantic Web Technologies for a Knowledge Base of Biomedical Facts Extracted from Scientific Literature. SWAT4LS (2016)
Venkata P. Satagopam, Wei Gu, Serge Eifes, Piotr Gawron, Marek Ostaszewski, Stephan Gebel, Adriano Barbosa-Silva, Rudi Balling, Reinhard Schneider
Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases. Big Data 4 (2) (2016)
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 31 (6) (2015)
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos
: a knowledge integration platform for literature mining and concept discovery. Bioinform. 30 (22) (2014)
Norman E. Davey, Venkata P. Satagopam, Salvador Santiago-Mozos, Carlos Villacorta-Martin, Tanmay A. M. Bharat, Reinhard Schneider, John A. G. Briggs
The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data. PLoS Comput. Biol. 10 (12) (2014)
Evangelos Pafilis, Georgios A. Pavlopoulos, Venkata P. Satagopam, Nikolas Papanikolaou, Heiko Horn, Christos Arvanitidis, Lars Juhl Jensen, Reinhard Schneider, Ioannis Iliopoulos
OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction. BIBE (2013)
Jeroen de Ridder, Yana Bromberg, Magali Michaut, Venkata P. Satagopam, Manuel Corpas, Geoff MacIntyre, Theodore Alexandrov
The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013. PLoS Comput. Biol. 9 (11) (2013)
Jeroen de Ridder, Thomas Abeel, Magali Michaut, Venkata P. Satagopam, Nils Gehlenborg
Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator. PLoS Comput. Biol. 9 (1) (2013)
Theodoros G. Soldatos, Seán I. O'Donoghue, Venkata P. Satagopam, Adriano Barbosa-Silva, Georgios A. Pavlopoulos, Ana Carolina Wanderley-Nogueira, Nina da Mota Soares-Cavalcanti, Reinhard Schneider
Caipirini: using gene sets to rank literature. BioData Min. 5 (2012)
Seán I. O'Donoghue, Heiko Horn, Evangelos Pafilis, Sven Haag, Michael Kuhn, Venkata P. Satagopam, Reinhard Schneider, Lars Juhl Jensen
Reflect: A practical approach to web semantics. J. Web Semant. 8 (2-3) (2010)
Venkata P. Satagopam, Margarita C. Theodoropoulou, Christos K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos Papandreou, Pantelis G. Bagos, Reinhard Schneider, Stavros J. Hamodrakas
GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. Database J. Biol. Databases Curation 2010 (2010)
Georgios A. Pavlopoulos, Seán I. O'Donoghue, Venkata P. Satagopam, Theodoros G. Soldatos, Evangelos Pafilis, Reinhard Schneider
Arena3D: visualization of biological networks in 3D. BMC Syst. Biol. 2 (2008)
Adriano Barbosa-Silva, Venkata P. Satagopam, Reinhard Schneider, José Miguel Ortega
Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence. BMC Bioinform. 9 (2008)