Jeroen de Ridder

ORCID

Publication Activity (10 Years)

Years Active: 2006-2019
Publications (10 Years): 7

Top Venues

Delft University of Technology, Netherlands (PHD)

Education History

Delft University of Technology, Netherlands

PHD

Publications

Amin Allahyar, Joske Ubels, Jeroen de Ridder
A data-driven interactome of synergistic genes improves network-based cancer outcome prediction. PLoS Comput. Biol. 15 (2) (2019)
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7 (2019)
Arnold Kuzniar, Jason Maassen, Stefan Verhoeven, Luca Santuari, Carl Shneider, Wigard Kloosterman, Jeroen de Ridder
A Portable and Scalable Workflow for Detecting Structural Variants in Whole-Genome Sequencing Data. eScience (2018)
Jaap Heringa, Marcel J. T. Reinders, Sanne Abeln, Jeroen de Ridder
ECCB 2016: The 15th European Conference on Computational Biology. Bioinform. 32 (17) (2016)
Erdogan Taskesen, Sepideh Babaei, Marcel J. T. Reinders, Jeroen de Ridder
Integration of gene expression and DNA-methylation profiles improves molecular subtype classification in acute myeloid leukemia. BMC Bioinform. 16 (S-4) (2015)
Sepideh Babaei, Ahmed Mahfouz, Marc Hulsman, Boudewijn P. F. Lelieveldt, Jeroen de Ridder, Marcel J. T. Reinders
Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex. PLoS Comput. Biol. 11 (5) (2015)
Amin Allahyar, Jeroen de Ridder
FERAL: network-based classifier with application to breast cancer outcome prediction. Bioinform. 31 (12) (2015)
Jeroen de Ridder, Pieter Meysman, Olugbenga O. Oluwagbemi, Thomas Abeel
Soft Skills: An Important Asset Acquired from Organizing Regional Student Group Activities. PLoS Comput. Biol. 10 (7) (2014)
Marc Hulsman, Christos Dimitrakopoulos, Jeroen de Ridder
Scale-space measures for graph topology link protein network architecture to function. Bioinform. 30 (12) (2014)
Dick de Ridder, Jeroen de Ridder, Marcel J. T. Reinders
Pattern recognition in bioinformatics. Briefings Bioinform. 14 (5) (2013)
Sepideh Babaei, Marc Hulsman, Marcel J. T. Reinders, Jeroen de Ridder
Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion. BMC Bioinform. 14 (2013)
Jeroen de Ridder, Yana Bromberg, Magali Michaut, Venkata P. Satagopam, Manuel Corpas, Geoff MacIntyre, Theodore Alexandrov
The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013. PLoS Comput. Biol. 9 (11) (2013)
Jeroen de Ridder, Thomas Abeel, Magali Michaut, Venkata P. Satagopam, Nils Gehlenborg
Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator. PLoS Comput. Biol. 9 (1) (2013)
Jeroen de Ridder, Jaap Kool, Anthony Uren, Jan Bot, Johann de Jong, Alistair G. Rust, Anton Berns, Maarten van Lohuizen, David J. Adams, Lodewyk F. A. Wessels, Marcel J. T. Reinders
Mutational Genomics for Cancer Pathway Discovery. PRIB (2013)
Sepideh Babaei, Erik van den Akker, Jeroen de Ridder, Marcel J. T. Reinders
Integrating Protein Family Sequence Similarities with Gene Expression to Find Signature Gene Networks in Breast Cancer Metastasis. PRIB (2011)
Jeroen de Ridder, Alice Gerrits, Jan Bot, Gerald de Haan, Marcel J. T. Reinders, Lodewyk F. A. Wessels
Inferring combinatorial association logic networks in multimodal genome-wide screens. Bioinform. 26 (12) (2010)
Erdogan Taskesen, Renee Beekman, Jeroen de Ridder, Bas J. Wouters, Justine K. Peeters, Ivo P. Touw, Marcel J. T. Reinders, Ruud Delwel
HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data. BMC Bioinform. 11 (2010)
Thomas Abeel, Jeroen de Ridder, Lucia Peixoto
European Conference on Computational Biology. BMC Bioinform. 10 (S-13) (2009)
Jeroen de Ridder, Jaap Kool, Anthony Uren, Jan Bot, Lodewyk F. A. Wessels, Marcel J. T. Reinders
Co-occurrence analysis of insertional mutagenesis data reveals cooperating oncogenes. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Jeroen de Ridder, Anthony Uren, Jaap Kool, Marcel J. T. Reinders, Lodewyk F. A. Wessels
Detecting Statistically Significant Common Insertion Sites in Retroviral Insertional Mutagenesis Screens. PLoS Comput. Biol. 2 (12) (2006)

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Publication Activity (10 Years)

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Jeroen de Ridder