Stefan Verhoeven

Publication Activity (10 Years)

Years Active: 2005-2021
Publications (10 Years): 6

Top Topics

Java Virtual Machine

Diabetes Mellitus

Software Platform

Top Venues

J. Chem. Inf. Model.

PLoS Comput. Biol.

Publications

Florian Huber, Lars Ridder, Stefan Verhoeven, Jurriaan H. Spaaks, Faruk Diblen, Simon Rogers, Justin J. J. van der Hooft
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. PLoS Comput. Biol. 17 (2) (2021)
Florian Huber, Stefan Verhoeven, Christiaan Meijer, Hanno Spreeuw, Efraín Castilla, Cunliang Geng, Justin J. J. van der Hooft, Simon Rogers, Adam Belloum, Faruk Diblen, Jurriaan H. Spaaks
matchms - processing and similarity evaluation of mass spectrometry data. J. Open Source Softw. 5 (52) (2020)
Arnold Kuzniar, Jason Maassen, Stefan Verhoeven, Luca Santuari, Carl Shneider, Wigard Kloosterman, Jeroen de Ridder
A Portable and Scalable Workflow for Detecting Structural Variants in Whole-Genome Sequencing Data. eScience (2018)
Jurriaan H. Spaaks, Tom Klaver, Stefan Verhoeven, Jason Maassen, Tom Bakker, Atze van der Ploeg, Ben van Werkhoven, Willem Robert van Hage, Rob V. van Nieuwpoort
Painting the Picture of Software Impact with the Research Software Directory. eScience (2018)
Ross McGuire, Stefan Verhoeven, Márton Vass, Gerrit Vriend, Iwan J. P. de Esch, Scott J. Lusher, Rob Leurs, Lars Ridder, Albert J. Kooistra, Tina Ritschel, Chris de Graaf
3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine. J. Chem. Inf. Model. 57 (2) (2017)
Oscar Martinez-Rubi, Maurice de Kleijn, Stefan Verhoeven, Niels Drost, Jisk Attema, Maarten A. J. van Meersbergen, Rob van Nieuwpoort, Rens de Hond, Eduardo Dias, Pjotr Svetachov
Using modular 3D digital earth applications based on point clouds for the study of complex sites. Int. J. Digit. Earth 9 (12) (2016)
Wilco W. M. Fleuren, Erik J. M. Toonen, Stefan Verhoeven, Raoul Frijters, Tim Hulsen, Ton Rullmann, René C. van Schaik, Jacob de Vlieg, Wynand Alkema
Identification of new biomarker candidates for glucocorticoid induced insulin resistance using literature mining. BioData Min. 6 (2013)
Marijn P. A. Sanders, Wilco W. M. Fleuren, Stefan Verhoeven, Sven van den Beld, Wynand Alkema, Jacob de Vlieg, Jan P. G. Klomp
ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs. BMC Bioinform. 12 (2011)
Marijn P. A. Sanders, Stefan Verhoeven, Chris de Graaf, Luc Roumen, Bas Vroling, Sander B. Nabuurs, Jacob de Vlieg, Jan P. G. Klomp
Snooker: A Structure-Based Pharmacophore Generation Tool Applied to Class A GPCRs. J. Chem. Inf. Model. 51 (9) (2011)
Bas Vroling, Marijn P. A. Sanders, Coos Baakman, Annika Borrmann, Stefan Verhoeven, Jan P. G. Klomp, Laerte Oliveira, Jacob de Vlieg, Gert Vriend
GPCRDB: information system for G protein-coupled receptors. Nucleic Acids Res. 39 (Database-Issue) (2011)
Wilco W. M. Fleuren, Stefan Verhoeven, Raoul Frijters, Bart Heupers, Jan Polman, René C. van Schaik, Jacob de Vlieg, Wynand Alkema
CoPub update: CoPub 5.0 a text mining system to answer biological questions. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Blaise T. F. Alako, Antoine Veldhoven, Sjozef van Baal, Rob Jelier, Stefan Verhoeven, Ton Rullmann, Jan Polman, Guido Jenster
CoPub Mapper: mining MEDLINE based on search term co-publication. BMC Bioinform. 6 (2005)