Jacob de Vlieg

Publication Activity (10 Years)

Years Active: 2006-2013
Publications (10 Years): 0

Top Topics

Tandem Mass Spectra

Coloured Petri Nets

Virtual Screening

Top Venues

J. Chem. Inf. Model.

J. Comput. Chem.

J. Comput. Aided Mol. Des.

Publications

Wilco W. M. Fleuren, Erik J. M. Toonen, Stefan Verhoeven, Raoul Frijters, Tim Hulsen, Ton Rullmann, René C. van Schaik, Jacob de Vlieg, Wynand Alkema
Identification of new biomarker candidates for glucocorticoid induced insulin resistance using literature mining. BioData Min. 6 (2013)
Gijs Schaftenaar, Jacob de Vlieg
Quantum mechanical polar surface area. J. Comput. Aided Mol. Des. 26 (3) (2012)
Eric J. Baede, Ernest den Bekker, Jan-Willem Boiten, Deborah Cronin, Rob van Gammeren, Jacob de Vlieg
Integrated Project Views: Decision Support Platform for Drug Discovery Project Teams. J. Chem. Inf. Model. 52 (6) (2012)
David J. Wood, Jacob de Vlieg, Markus Wagener, Tina Ritschel
Pharmacophore Fingerprint-Based Approach to Binding Site Subpocket Similarity and Its Application to Bioisostere Replacement. J. Chem. Inf. Model. 52 (8) (2012)
Markus Wagener, Jacob de Vlieg, Sander B. Nabuurs
Flexible protein-ligand docking using the Fleksy protocol. J. Comput. Chem. 33 (12) (2012)
Marijn P. A. Sanders, Arménio Jorge Moura Barbosa, Barbara Zarzycka, Gerry A. F. Nicolaes, Jan P. G. Klomp, Jacob de Vlieg, Alberto Del Rio
Comparative Analysis of Pharmacophore Screening Tools. J. Chem. Inf. Model. 52 (6) (2012)
Tina Ritschel, David J. Wood, Jacob de Vlieg, Markus Wagener
Extraction of useful bioisostere replacments from the PDB. J. Cheminformatics 3 (S-1) (2011)
Marijn P. A. Sanders, Wilco W. M. Fleuren, Stefan Verhoeven, Sven van den Beld, Wynand Alkema, Jacob de Vlieg, Jan P. G. Klomp
ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs. BMC Bioinform. 12 (2011)
Marijn P. A. Sanders, Stefan Verhoeven, Chris de Graaf, Luc Roumen, Bas Vroling, Sander B. Nabuurs, Jacob de Vlieg, Jan P. G. Klomp
Snooker: A Structure-Based Pharmacophore Generation Tool Applied to Class A GPCRs. J. Chem. Inf. Model. 51 (9) (2011)
Bas Vroling, Marijn P. A. Sanders, Coos Baakman, Annika Borrmann, Stefan Verhoeven, Jan P. G. Klomp, Laerte Oliveira, Jacob de Vlieg, Gert Vriend
GPCRDB: information system for G protein-coupled receptors. Nucleic Acids Res. 39 (Database-Issue) (2011)
Wilco W. M. Fleuren, Stefan Verhoeven, Raoul Frijters, Bart Heupers, Jan Polman, René C. van Schaik, Jacob de Vlieg, Wynand Alkema
CoPub update: CoPub 5.0 a text mining system to answer biological questions. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Markus Wagener, Sander B. Nabuurs, Jacob de Vlieg
Fleksy: a flexible approach to induced fit docking. J. Cheminformatics 2 (S-1) (2010)
Jorn R. de Haan, Ester Piek, René C. van Schaik, Jacob de Vlieg, Susanne Bauerschmidt, Lutgarde M. C. Buydens, Ron Wehrens
Integrating gene expression and GO classification for PCA by preclustering. BMC Bioinform. 11 (2010)
Raoul Frijters, Marianne van Vugt, Ruben Smeets, René C. van Schaik, Jacob de Vlieg, Wynand Alkema
Literature Mining for the Discovery of Hidden Connections between Drugs, Genes and Diseases. PLoS Comput. Biol. 6 (9) (2010)
Tim Hulsen, Peter M. A. Groenen, Jacob de Vlieg, Wynand Alkema
PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood. Nucleic Acids Res. 37 (Database-Issue) (2009)
Raoul Frijters, Bart Heupers, Pieter van Beek, Maurice Bouwhuis, René C. van Schaik, Jacob de Vlieg, Jan Polman, Wynand Alkema
CoPub: a literature-based keyword enrichment tool for microarray data analysis. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Tim Hulsen, Jacob de Vlieg, Peter M. A. Groenen
PhyloPat: phylogenetic pattern analysis of eukaryotic genes. BMC Bioinform. 7 (2006)
Tim Hulsen, Jacob de Vlieg, Jack A. M. Leunissen, Peter M. A. Groenen
Testing statistical significance scores of sequence comparison methods with structure similarity. BMC Bioinform. 7 (2006)