Simon Rogers

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 30

Top Topics

Category Recognition

Dynamical Systems

Mass Spectrometry

Machine Learning

Top Venues

PLoS Comput. Biol.

Publications

Jim Smith, Richard John Preen, Andrew McCarthy, Alba Crespi-Boixader, James Liley, Simon Rogers
Safe machine learning model release from Trusted Research Environments: The AI-SDC package. CoRR (2022)
Alexandrina Pancheva, Helen Wheadon, Simon Rogers, Thomas D. Otto
Using topic modeling to detect cellular crosstalk in scRNA-seq. PLoS Comput. Biol. 18 (4) (2022)
Emily Jefferson, James Liley, Maeve Malone, Smarti Reel, Alba Crespi-Boixader, Xaroula Kerasidou, Francesco Tava, Andrew McCarthy, Richard Preen, Alberto Blanco-Justicia, Esma Mansouri-Benssassi, Josep Domingo-Ferrer, Jillian Beggs, Antony Chuter, Christian Cole, Felix Ritchie, Angela Daly, Simon Rogers, Jim Smith
GRAIMATTER Green Paper: Recommendations for disclosure control of trained Machine Learning (ML) models from Trusted Research Environments (TREs). CoRR (2022)
Joe Wandy, Vinny Davies, Ross McBride, Stefan Weidt, Simon Rogers, Rónán Daly
ViMMS 2.0: A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics. J. Open Source Softw. 7 (71) (2022)
Simon Rogers, Virgilio L. Lew
PIEZO1 and the mechanism of the long circulatory longevity of human red blood cells. PLoS Comput. Biol. 17 (3) (2021)
Grímur Hjörleifsson Eldjárn, Andrew Ramsay, Justin J. J. van der Hooft, Katherine R. Duncan, Sylvia Soldatou, Juho Rousu, Rónán Daly, Joe Wandy, Simon Rogers
Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions. PLoS Comput. Biol. 17 (5) (2021)
Florian Huber, Lars Ridder, Stefan Verhoeven, Jurriaan H. Spaaks, Faruk Diblen, Simon Rogers, Justin J. J. van der Hooft
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. PLoS Comput. Biol. 17 (2) (2021)
Esma Mansouri-Benssassi, Simon Rogers, Jim Smith, Felix Ritchie, Emily Jefferson
Machine Learning Models Disclosure from Trusted Research Environments (TRE), Challenges and Opportunities. CoRR (2021)
Eric Bach, Simon Rogers, John Williamson, Juho Rousu
Probabilistic framework for integration of mass spectrum and retention time information in small molecule identification. Bioinform. 37 (12) (2021)
Simon Rogers, Virgilio L. Lew
Up-down biphasic volume response of human red blood cells to PIEZO1 activation during capillary transits. PLoS Comput. Biol. 17 (3) (2021)
Mu Niu, Joe Wandy, Rónán Daly, Simon Rogers, Dirk Husmeier
R package for statistical inference in dynamical systems using kernel based gradient matching: KGode. Comput. Stat. 36 (1) (2021)
Roderick Murray-Smith, John H. Williamson, Andrew Ramsay, Francesco Tonolini, Simon Rogers, Antoine Loriette
Forward and Inverse models in HCI: Physical simulation and deep learning for inferring 3D finger pose. CoRR (2021)
Florian Huber, Stefan Verhoeven, Christiaan Meijer, Hanno Spreeuw, Efraín Castilla, Cunliang Geng, Justin J. J. van der Hooft, Simon Rogers, Adam Belloum, Faruk Diblen, Jurriaan H. Spaaks
matchms - processing and similarity evaluation of mass spectrometry data. J. Open Source Softw. 5 (52) (2020)
Francesca Young, Simon Rogers, David L. Robertson
Predicting host taxonomic information from viral genomes: A comparison of feature representations. PLoS Comput. Biol. 16 (5) (2020)
Kyle A. Simpson, Simon Rogers, Dimitrios P. Pezaros
Per-Host DDoS Mitigation by Direct-Control Reinforcement Learning. IEEE Trans. Netw. Serv. Manag. 17 (1) (2020)
Mu Niu, Benn Macdonald, Simon Rogers, Maurizio Filippone, Dirk Husmeier
Statistical inference in mechanistic models: time warping for improved gradient matching. Comput. Stat. 33 (2) (2018)
Joe Wandy, Mu Niu, Diana Giurghita, Rónán Daly, Simon Rogers, Dirk Husmeier
ShinyKGode: an interactive application for ODE parameter inference using gradient matching. Bioinform. 34 (13) (2018)
Joe Wandy, Yunfeng Zhu, Justin J. J. van der Hooft, Rónán Daly, Michael P. Barrett, Simon Rogers
Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry. Bioinform. 34 (2) (2018)
Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, Jan Paul Siebert
Autonomous Clothes Manipulation Using a Hierarchical Vision Architecture. IEEE Access 6 (2018)
Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, Rustam Stolkin, J. Paul Siebert
Single-Shot Clothing Category Recognition in Free-Configurations with Application to Autonomous Clothes Sorting. CoRR (2017)
Yoann Gloaguen, Fraser R. Morton, Rónán Daly, Ross Gurden, Simon Rogers, Joe Wandy, David Wilson, Michael P. Barrett, Karl E. V. Burgess
PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data. Bioinform. 33 (24) (2017)
Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, Rustam Stolkin, J. Paul Siebert
Single-shot clothing category recognition in free-configurations with application to autonomous clothes sorting. IROS (2017)
Mohammad Faizuddin Mohd Noor, Simon Rogers, John Williamson
Pre-interaction identification by dynamic grip classification. IMCOM (2017)
Mu Niu, Simon Rogers, Maurizio Filippone, Dirk Husmeier
Fast Parameter Inference in Nonlinear Dynamical Systems using Iterative Gradient Matching. ICML (2016)
Li Sun, Simon Rogers, Gerardo Aragon-Camarasa, J. Paul Siebert
Recognising the clothing categories from free-configuration using Gaussian-Process-based interactive perception. ICRA (2016)
Mohammad Faizuddin Mohd Noor, Simon Rogers, John Williamson
Detecting Swipe Errors on Touchscreens using Grip Modulation. CHI (2016)
Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, J. Paul Siebert
Robot Vision Architecture for Autonomous Clothes Manipulation. CoRR (2016)
Mu Niu, Simon Rogers, Maurizio Filippone, Dirk Husmeier
Parameter Inference in Differential Equation Models of Biopathways Using Time Warped Gradient Matching. CIBB (2016)
Joe Wandy, Rónán Daly, Rainer Breitling, Simon Rogers
Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets. Bioinform. 31 (12) (2015)
Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, J. Paul Siebert
Accurate garment surface analysis using an active stereo robot head with application to dual-arm flattening. ICRA (2015)
Daryl Weir, Henning Pohl, Simon Rogers, Keith Vertanen, Per Ola Kristensson
Uncertain text entry on mobile devices. CHI (2014)
Tommi Suvitaival, Simon Rogers, Samuel Kaski
Stronger findings from mass spectral data through multi-peak modeling. BMC Bioinform. 15 (2014)
Edwin Thuma, Simon Rogers, Iadh Ounis
Detecting Missing Content Queries in an SMS-Based HIV/AIDS FAQ Retrieval System. ECIR (2014)
Tommi Suvitaival, Simon Rogers, Samuel Kaski
Stronger findings for metabolomics through Bayesian modeling of multiple peaks and compound correlations. Bioinform. 30 (17) (2014)
Mohammad Faizuddin Mohd Noor, Andrew Ramsay, Stephen Hughes, Simon Rogers, John Williamson, Roderick Murray-Smith
28 frames later: predicting screen touches from back-of-device grip changes. CHI (2014)
Rónán Daly, Simon Rogers, Joe Wandy, Andris Jankevics, Karl E. V. Burgess, Rainer Breitling
MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach. Bioinform. 30 (19) (2014)
Simon Rogers, Derek H. Sleeman, John Kinsella
Investigating the Disagreement Between Clinicians' Ratings of Patients in ICUs. IEEE J. Biomed. Health Informatics 17 (4) (2013)
Frank Dondelinger, Dirk Husmeier, Simon Rogers, Maurizio Filippone
ODE parameter inference using adaptive gradient matching with Gaussian processes. AISTATS (2013)
Edwin Thuma, Simon Rogers, Iadh Ounis
Exploiting Query Logs and Field-Based Models to Address Term Mismatch in an HIV/AIDS FAQ Retrieval System. NLDB (2013)
Li Sun, Gerardo Aragon-Camarasa, W. Paul Cockshott, Simon Rogers, J. Paul Siebert
A Heuristic-Based Approach for Flattening Wrinkled Clothes. TAROS (2013)
Daryl Weir, Daniel Buschek, Simon Rogers
Sparse selection of training data for touch correction systems. Mobile HCI (2013)
Edwin Thuma, Simon Rogers, Iadh Ounis
Evaluating bad query abandonment in an iterative SMS-based FAQ retrieval system. OAIR (2013)
Daniel Buschek, Simon Rogers, Roderick Murray-Smith
User-specific touch models in a cross-device context. Mobile HCI (2013)
Daryl Weir, Simon Rogers, Roderick Murray-Smith, Markus Löchtefeld
A user-specific machine learning approach for improving touch accuracy on mobile devices. UIST (2012)
Tamara Polajnar, Simon Rogers, Mark A. Girolami
Protein interaction detection in sentences via Gaussian Processes: a preliminary evaluation. Int. J. Data Min. Bioinform. 5 (1) (2011)
Simon Rogers, John Williamson, Craig D. Stewart, Roderick Murray-Smith
AnglePose: robust, precise capacitive touch tracking via 3d orientation estimation. CHI (2011)
Simon Rogers, John Williamson, Craig D. Stewart, Roderick Murray-Smith
FingerCloud: uncertainty and autonomy handover incapacitive sensing. CHI (2010)
Simon Rogers, Mark A. Girolami, Tamara Polajnar
Semi-parametric analysis of multi-rater data. Stat. Comput. 20 (3) (2010)
Simon Rogers, Arto Klami, Janne Sinkkonen, Mark A. Girolami, Samuel Kaski
Infinite factorization of multiple non-parametric views. Mach. Learn. 79 (1-2) (2010)
Tamara Polajnar, Simon Rogers, Mark A. Girolami
Classification of Protein Interaction Sentences via Gaussian Processes. PRIB (2009)
Simon Rogers, Richard A. Scheltema, Mark A. Girolami, Rainer Breitling
Probabilistic assignment of formulas to mass peaks in metabolomics experiments. Bioinform. 25 (4) (2009)
Simon Rogers, Mark A. Girolami, Walter Kolch, Katrina M. Waters, Tao Liu, Brian Thrall, H. Steven Wiley
Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models. Bioinform. 24 (24) (2008)
Simon Rogers, Raya Khanin, Mark A. Girolami
Bayesian model-based inference of transcription factor activity. BMC Bioinform. 8 (S-2) (2007)
Simon Rogers, Mark A. Girolami
Multi-class Semi-supervised Learning with the e-truncated Multinomial Probit Gaussian Process. Gaussian Processes in Practice (2007)
Mark A. Girolami, Simon Rogers
Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors. Neural Comput. 18 (8) (2006)
Simon Rogers, Mark A. Girolami, Colin Campbell, Rainer Breitling
The Latent Process Decomposition of cDNA Microarray Data Sets. IEEE ACM Trans. Comput. Biol. Bioinform. 2 (2) (2005)
Simon Rogers, Mark A. Girolami, Ronald Krebs, Harald Mischak
Disease Classification from Capillary Electrophoresis: Mass Spectrometry. ICAPR (1) (2005)
Simon Rogers, Mark A. Girolami
A Bayesian regression approach to the inference of regulatory networks from gene expression data. Bioinform. 21 (14) (2005)
Mark A. Girolami, Simon Rogers
Hierarchic Bayesian models for kernel learning. ICML (2005)
Sayan Mukherjee, Pablo Tamayo, Simon Rogers, Ryan M. Rifkin, Anna Engle, Colin Campbell, Todd R. Golub, Jill P. Mesirov
Estimating Dataset Size Requirements for Classifying DNA Microarray Data. J. Comput. Biol. 10 (2) (2003)