Jill P. Mesirov

Publication Activity (10 Years)

Years Active: 1989-2023
Publications (10 Years): 4

Top Topics

Visualization Tool

Visual Exploration

Gene Expression

Exploratory Analysis

Top Venues

Publications

James T. Robinson, Helga Thorvaldsdóttir, Douglass Turner, Jill P. Mesirov
igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). Bioinform. 39 (1) (2023)
Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Jill P. Mesirov, Alexander A. Morgan, Predrag Radivojac
Session introduction. PSB (2019)
Clarence K. Mah, Thorin Tabor, Jill P. Mesirov
An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data. F1000Research 7 (2018)
Daniel E. Carlin, Kassi Kosnicki, Sara Garamszegi, Trey Ideker, Helga Thorvaldsdóttir, Michael Reich, Jill P. Mesirov
A multi-tool recipe to identify regions of protein-DNA binding and their influence on associated gene expression. F1000Research 6 (2017)
Yan Tan, Felix Wu, Pablo Tamayo, W. Nicholas Haining, Jill P. Mesirov
Constellation Map: Downstream visualization and interpretation of gene set enrichment results. F1000Research 4 (2015)
Yarden Katz, Eric T. Wang, Jacob Silterra, Schraga Schwartz, Bang Wong, Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov, Edoardo M. Airoldi, Christopher B. Burge
Quantitative visualization of alternative exon expression from RNA-seq data. Bioinform. 31 (14) (2015)
Barry Demchak, Tim Hull, Michael Reich, Ted Liefeld, Michael E. Smoot, Trey Ideker, Jill P. Mesirov
Cytoscape: the network visualization tool for GenomeSpace workflows. F1000Research 3 (2014)
Josef Spidlen, Aaron Barsky, Karin Breuer, Peter Carr, Marc-Danie Nazaire, Barbara A. Hill, Yu Qian, Ted Liefeld, Michael Reich, Jill P. Mesirov, Peter Wilkinson, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan Remy Brinkman
GenePattern Flow Cytometry Suite. Source Code Biol. Medicine 8 (2013)
Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Briefings Bioinform. 14 (2) (2013)
Fabien Campagne, Kevin C. Dorff, Nyasha Chambwe, James T. Robinson, Jill P. Mesirov, Thomas D. Wu
Compression of structured high-throughput sequencing data CoRR (2012)
Liming Lai, Arthur Liberzon, Jason Hennessey, Gaixin Jiang, Jianli Qi, Jill P. Mesirov, Steven X. Ge
AraPath: a knowledgebase for pathway analysis in Arabidopsis. Bioinform. 28 (17) (2012)
Arthur Liberzon, Aravind Subramanian, Reid Pinchback, Helga Thorvaldsdóttir, Pablo Tamayo, Jill P. Mesirov
Molecular signatures database (MSigDB) 3.0. Bioinform. 27 (12) (2011)
Saumyadipta Pyne, Xinli Hu, Kui Wang, Elizabeth Rossin, Tsung-I Lin, Lisa Maier, Clare Baecher-Allan, Geoffrey J. McLachlan, Pablo Tamayo, David Hafler, Philip L. De Jager, Jill P. Mesirov
Automated High-Dimensional Flow Cytometric Data Analysis. RECOMB (2010)
Michal Linial, Jill P. Mesirov, B. J. Morrison McKay, Burkhard Rost
ISMB 2008 Toronto. PLoS Comput. Biol. 4 (6) (2008)
Gul S. Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P. Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot
Portraits of breast cancer progression. BMC Bioinform. 8 (2007)
Aravind Subramanian, Heidi Kuehn, Joshua Gould, Pablo Tamayo, Jill P. Mesirov
: a desktop application for Gene Set Enrichment Analysis. Bioinform. 23 (23) (2007)
Joshua Gould, Gad Getz, Stefano Monti, Michael Reich, Jill P. Mesirov
Comparative gene marker selection suite. Bioinform. 22 (15) (2006)
Reinhard Engels, Tamara Yu, Christopher B. Burge, Jill P. Mesirov, David DeCaprio, James E. Galagan
Combo: a whole genome comparative browser. Bioinform. 22 (14) (2006)
Tarjei S. Mikkelsen, James E. Galagan, Jill P. Mesirov
Improving genome annotations using phylogenetic profile anomaly detection. Bioinform. 21 (4) (2005)
Ted Liefeld, Michael Reich, Joshua Gould, Peili Zhang, Pablo Tamayo, Jill P. Mesirov
GeneCruiser: a web service for the annotation of microarray data. Bioinform. 21 (18) (2005)
Michael Reich, K. Ohm, Michael Angelo, Pablo Tamayo, Jill P. Mesirov
GeneCluster 2.0: an advanced toolset for bioarray analysis. Bioinform. 20 (11) (2004)
Ryan M. Rifkin, Sayan Mukherjee, Pablo Tamayo, Sridhar Ramaswamy, Chen-Hsiang Yeang, Michael Angelo, Michael Reich, Tomaso A. Poggio, Eric S. Lander, Todd R. Golub, Jill P. Mesirov
An Analytical Method for Multiclass Molecular Cancer Classification. SIAM Rev. 45 (4) (2003)
Sayan Mukherjee, Pablo Tamayo, Simon Rogers, Ryan M. Rifkin, Anna Engle, Colin Campbell, Todd R. Golub, Jill P. Mesirov
Estimating Dataset Size Requirements for Classifying DNA Microarray Data. J. Comput. Biol. 10 (2) (2003)
Stefano Monti, Pablo Tamayo, Jill P. Mesirov, Todd R. Golub
Consensus Clustering: A Resampling-Based Method for Class Discovery and Visualization of Gene Expression Microarray Data. Mach. Learn. 52 (1-2) (2003)
Chen-Hsiang Yeang, Sridhar Ramaswamy, Pablo Tamayo, Sayan Mukherjee, Ryan M. Rifkin, Michael Angelo, Michael Reich, Eric S. Lander, Jill P. Mesirov, Todd R. Golub
Molecular classification of multiple tumor types. ISMB (Supplement of Bioinformatics) (2001)
Donna K. Slonim, Pablo Tamayo, Jill P. Mesirov, Todd R. Golub, Eric S. Lander
Class prediction and discovery using gene expression data. RECOMB (2000)
Serafim Batzoglou, Bonnie Berger, Jill P. Mesirov, Eric S. Lander
Sequencing a genome by walking with clone-end sequences: a mathematical analysis (abstract). RECOMB (2000)
Serafim Batzoglou, Lior Pachter, Jill P. Mesirov, Bonnie Berger, Eric S. Lander
Human and mouse gene structure: comparative analysis and application to exon prediction. RECOMB (2000)
Jill P. Mesirov, Donna K. Slonim
Computational biology. Comput. Sci. Eng. 1 (3) (1999)
Mike McKenna, Jill P. Mesirov, Stavros A. Zenios
Data Parallel Quadratic Programming on Box-Constrained Problems. SIAM J. Optim. 5 (3) (1995)
Jean-Philippe Brunet, Alan Edelman, Jill P. Mesirov
Erratum: Hypercube Algorithms for Direct N-Body Solvers for Different Granularities. SIAM J. Sci. Comput. 15 (1) (1994)
Jean-Philippe Brunet, Jill P. Mesirov, Alan Edelman
Hypercube Algorithms for Direct N-Body Solvers for Different Granularities. SIAM J. Sci. Comput. 14 (5) (1993)
Pablo Tamayo, Jill P. Mesirov, Bruce M. Boghosian
Parallel approaches to short range molecular dynamics simulations. SC (1991)
James A. Sethian, Jean-Philippe Brunet, Adam Greenberg, Jill P. Mesirov
Computing turbulent flow in complex geometries on a massively parallel processor. SC (1991)
Jean-Philippe Brunet, Alan Edelman, Jill P. Mesirov
-body solver on the connection machine. SC (1990)
Xiru Zhang, Michael McKenna, Jill P. Mesirov, David L. Waltz
The backpropagation algorithm on grid and hypercube architectures. Parallel Comput. 14 (3) (1990)
Eric S. Lander, Jill P. Mesirov, Washington Taylor
Study of protein sequence comparison metrics on the connection machine CM-2. J. Supercomput. 3 (4) (1989)
Xiru Zhang, David L. Waltz, Jill P. Mesirov
Protein structure prediction by a data-level parallel algorithm. SC (1989)
Xiru Zhang, Michael McKenna, Jill P. Mesirov, David L. Waltz
An Efficient Implementation of the Back-propagation Algorithm on the Connection Machine CM-2. NIPS (1989)