James E. Galagan

Publication Activity (10 Years)

Years Active: 2005-2019
Publications (10 Years): 2

Top Topics

Biological Processes

High Throughput

Gene Regulation

Top Venues

BMC Syst. Biol.

Nucleic Acids Res.

Publications

Alberto Santos-Zavaleta, Heladia Salgado, Socorro Gama-Castro, Mishael Sánchez-Pérez, Laura Gómez-Romero, Daniela Ledezma-Tejeida, Jair Santiago García-Sotelo, Kevin Alquicira-Hernández, Luis Muñiz-Rascado, Pablo Peña-Loredo, Cecilia Ishida-Gutiérrez, David A. Velázquez-Ramírez, Victor del Moral-Chávez, César Bonavides-Martínez, Carlos-Francisco Méndez-Cruz, James E. Galagan, Julio Collado-Vides
RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12. Nucleic Acids Res. 47 (Database-Issue) (2019)
Patricia Aquino, Brent Honda, Suma Jaini, Anna Lyubetskaya, Krutika Hosur, Joanna G. Chiu, Iriny Ekladious, Dongjian Hu, Lin Jin, Marianna K. Sayeg, Arion Stettner, Julia Wang, Brandon G. Wong, Winnie S. Wong, Stephen L. Alexander, Cong Ba, Seth I. Bensussen, David B. Bernstein, Dana Braff, Susie Cha, Daniel I. Cheng, Jang-Hwan Cho, Kenny Chou, James Chuang, Daniel E. Gastler, Daniel J. Grasso, John S. Greifenberger, Chen Guo, Anna K. Hawes, Divya V. Israni, Saloni R. Jain, Jessica Kim, Junyu Lei, Hao Li, David Li, Qian Li, Christopher P. Mancuso, Ning Mao, Salwa F. Masud, Cari L. Meisel, Jing Mi, Christine S. Nykyforchyn, Minhee Park, Hannah M. Peterson, Alfred K. Ramirez, Daniel S. Reynolds, Nae Gyune Rim, Jared C. Saffie, Hang Su, Wendell R. Su, Yaqing Su, Meng Sun, Meghan M. Thommes, Tao Tu, Nitinun Varongchayakul, Tyler E. Wagner, Benjamin H. Weinberg, Rouhui Yang, Anastasia Yaroslavsky, Christine Yoon, Yanyu Zhao, Alicia J. Zollinger, Anne M. Stringer, John W. Foster, Joseph Wade, Sahadaven Raman, Natasha Broude, Wilson W. Wong, James E. Galagan
Coordinated regulation of acid resistance in Escherichia coli. BMC Syst. Biol. 11 (1) (2017)
Christopher Garay, Jonathan M. Dreyfuss, James E. Galagan
Metabolic modeling predicts metabolite changes in Mycobacterium tuberculosis. BMC Syst. Biol. 9 (2015)
Elham Azizi, James E. Galagan, Edoardo M. Airoldi
Learning modular structures from network data and node variables. CoRR (2014)
Elham Azizi, Edoardo M. Airoldi, James E. Galagan
Learning Modular Structures from Network Data and Node Variables. ICML (2014)
Jonathan M. Dreyfuss, Jeremy D. Zucker, Heather M. Hood, Linda R. Ocasio, Matthew S. Sachs, James E. Galagan
Using FARM. PLoS Comput. Biol. 9 (7) (2013)
James E. Galagan, Kyle J. Minch, Matthew Peterson, Anna Lyubetskaya, Elham Azizi, Linsday Sweet, Antonio Gomes, Tige R. Rustad, Gregory Dolganov, Irina Glotova, Thomas Abeel, Chris Mahwinney, Adam D. Kennedy, René Allard, William Brabant, Andrew Krueger, Suma Jaini, Brent Honda, Wen-Han Yu, Mark J. Hickey, Jeremy Zucker, Christopher Garay, Brian Weiner, Peter Sisk, Christian Stolte, Jessica K. Winkler, Yves Van de Peer, Paul Iazzetti, Diogo Camacho, Jonathan M. Dreyfuss, Yang Liu, Anca Dorhoi, Hans-Joachim Mollenkopf, Paul Drogaris, Julie Lamontagne, Yiyong Zhou, Julie Piquenot, Sang Tae Park, Sahadevan Raman, Stefan H. E. Kaufmann, Robert P. Mohney, Daniel Chelsky, D. Branch Moody, David R. Sherman, Gary K. Schoolnik
regulatory network and hypoxia. Nat. 499 (7457) (2013)
Caroline Colijn, Aaron Brandes, Jeremy Zucker, Desmond S. Lun, Brian Weiner, Maha R. Farhat, Tan-Yun Cheng, D. Branch Moody, Megan Murray, James E. Galagan
Mycolic Acid Production. PLoS Comput. Biol. 5 (8) (2009)
T. B. K. Reddy, Robert Riley, Farrell Wymore, Phillip Montgomery, David DeCaprio, Reinhard Engels, Marcel Gellesch, Jeremy Hubble, Dennis Jen, Heng Jin, Michael Koehrsen, Lisa Larson, Maria Mao, Michael Nitzberg, Peter Sisk, Christian Stolte, Brian Weiner, Jared White, Zachariah K. Zachariah, Gavin Sherlock, James E. Galagan, Catherine A. Ball, Gary K. Schoolnik
TB database: an integrated platform for tuberculosis research. Nucleic Acids Res. 37 (Database-Issue) (2009)
Jade P. Vinson, David DeCaprio, Matthew D. Pearson, Stacey Luoma, James E. Galagan
Comparative Gene Prediction using Conditional Random Fields. NIPS (2006)
Reinhard Engels, Tamara Yu, Christopher B. Burge, Jill P. Mesirov, David DeCaprio, James E. Galagan
Combo: a whole genome comparative browser. Bioinform. 22 (14) (2006)
Tarjei S. Mikkelsen, James E. Galagan, Jill P. Mesirov
Improving genome annotations using phylogenetic profile anomaly detection. Bioinform. 21 (4) (2005)