Thomas Abeel

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 6

Top Topics

Tracking Multiple Objects

Technology Enhanced

Top Venues

PLoS Comput. Biol.

Publications

Junhan Wen, Camiel R. Verschoor, Chengming Feng, Irina-Mona Epure, Thomas Abeel, Mathijs de Weerdt
The Growing Strawberries Dataset: Tracking Multiple Objects with Biological Development over an Extended Period. WACV (2024)
Marco Teixeira, Stephanie Pillay, Aysun Urhan, Thomas Abeel
SHIP: identifying antimicrobial resistance gene transfer between plasmids. Bioinform. 39 (10) (2023)
Lore Depuydt, Luca Renders, Thomas Abeel, Jan Fostier
Pan-genome de Bruijn graph using the bidirectional FM-index. BMC Bioinform. 24 (1) (2023)
Ramin Shirali Hossein Zade, Aysun Urhan, Alvaro Assis de Souza, Akash Singh, Thomas Abeel
HAT: haplotype assembly tool using short and error-prone long reads. Bioinform. 38 (24) (2022)
Alex Salazar, Franklin L. Nobrega, Christine Anyansi, Cristian Aparicio-Maldonado, Ana Rita Costa, Anna C. Haagsma, Anwar Hiralal, Ahmed Mahfouz, Rebecca E. McKenzie, Teunke van Rossum, Stan J. J. Brouns, Thomas Abeel
An educational guide for nanopore sequencing in the classroom. PLoS Comput. Biol. 16 (1) (2020)
Alex Salazar, Thomas Abeel
Approximate, simultaneous comparison of microbial genome architectures via syntenic anchoring of quiver representations. Bioinform. 34 (17) (2018)
Alex Salazar, Ashlee Earl, Christopher Desjardins, Thomas Abeel
Normalizing alternate representations of large sequence variants across multiple bacterial genomes. BMC Bioinform. 16 (S-2) (2015)
Tarun Mishra, R. Gonzalo Parra, Thomas Abeel
The Upside of Failure: How Regional Student Groups Learn from Their Mistakes. PLoS Comput. Biol. 10 (8) (2014)
Jeroen de Ridder, Pieter Meysman, Olugbenga O. Oluwagbemi, Thomas Abeel
Soft Skills: An Important Asset Acquired from Organizing Regional Student Group Activities. PLoS Comput. Biol. 10 (7) (2014)
Alex Bateman, Janet Kelso, Daniel Mietchen, Geoff MacIntyre, Tomás Di Domenico, Thomas Abeel, Darren W. Logan, Predrag Radivojac, Burkhard Rost
ISCB Computational Biology Wikipedia Competition. PLoS Comput. Biol. 9 (9) (2013)
Teresa Szczepinska, Wataru Iwasaki, Thomas Abeel
The Spirit of Competition: To Win or Not To Win. PLoS Comput. Biol. 9 (12) (2013)
James E. Galagan, Kyle J. Minch, Matthew Peterson, Anna Lyubetskaya, Elham Azizi, Linsday Sweet, Antonio Gomes, Tige R. Rustad, Gregory Dolganov, Irina Glotova, Thomas Abeel, Chris Mahwinney, Adam D. Kennedy, René Allard, William Brabant, Andrew Krueger, Suma Jaini, Brent Honda, Wen-Han Yu, Mark J. Hickey, Jeremy Zucker, Christopher Garay, Brian Weiner, Peter Sisk, Christian Stolte, Jessica K. Winkler, Yves Van de Peer, Paul Iazzetti, Diogo Camacho, Jonathan M. Dreyfuss, Yang Liu, Anca Dorhoi, Hans-Joachim Mollenkopf, Paul Drogaris, Julie Lamontagne, Yiyong Zhou, Julie Piquenot, Sang Tae Park, Sahadevan Raman, Stefan H. E. Kaufmann, Robert P. Mohney, Daniel Chelsky, D. Branch Moody, David R. Sherman, Gary K. Schoolnik
regulatory network and hypoxia. Nat. 499 (7457) (2013)
Avinash Kumar Shanmugam, Geoff MacIntyre, Magali Michaut, Thomas Abeel
Ten Simple Rules for Starting a Regional Student Group. PLoS Comput. Biol. 9 (11) (2013)
Geoff MacIntyre, Magali Michaut, Thomas Abeel
The Regional Student Group Program of the ISCB Student Council: Stories from the Road. PLoS Comput. Biol. 9 (9) (2013)
Jeroen de Ridder, Thomas Abeel, Magali Michaut, Venkata P. Satagopam, Nils Gehlenborg
Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator. PLoS Comput. Biol. 9 (1) (2013)
Sofie Van Landeghem, Jari Björne, Thomas Abeel, Bernard De Baets, Tapio Salakoski, Yves Van de Peer
Semantically linking molecular entities in literature through entity relationships. BMC Bioinform. 13 (S-11) (2012)
Alexander Goncearenco, Priscila Grynberg, Olga B. Botvinnik, Geoff MacIntyre, Thomas Abeel
Highlights from the Eighth International Society for Computational Biology (ISCB) Student Council Symposium 2012. BMC Bioinform. 13 (S-18) (2012)
Sofie Van Landeghem, Thomas Abeel, Bernard De Baets, Yves Van de Peer
Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction. BioNLP@ACL (Shared Task) (2011)
Priscila Grynberg, Thomas Abeel, Pedro Lopes, Geoff MacIntyre, Lorena Pantano Rubiño
Highlights from the Student Council Symposium 2011 at the International Conference on Intelligent Systems for Molecular Biology and European Conference on Computational Biology. BMC Bioinform. 12 (S-11) (2011)
Thomas Abeel, Sofie Van Landeghem, Roser Morante, Vincent Van Asch, Yves Van de Peer, Walter Daelemans, Yvan Saeys
Highlights of the BioTM 2010 workshop on advances in bio text mining. BMC Bioinform. 11 (S-5) (2010)
Thomas Abeel, Thibault Helleputte, Yves Van de Peer, Pierre Dupont, Yvan Saeys
Robust biomarker identification for cancer diagnosis with ensemble feature selection methods. Bioinform. 26 (3) (2010)
Christiaan Klijn, Magali Michaut, Thomas Abeel
Highlights from the 6th International Society for Computational Biology Student Council Symposium at the 18th Annual International Conference on Intelligent Systems for Molecular Biology. BMC Bioinform. 11 (S-10) (2010)
Sofie Van Landeghem, Thomas Abeel, Yvan Saeys, Yves Van de Peer
Discriminative and informative features for biomolecular text mining with ensemble feature selection. Bioinform. 26 (18) (2010)
Thomas Abeel, Yves Van de Peer, Yvan Saeys
Toward a gold standard for promoter prediction evaluation. Bioinform. 25 (12) (2009)
Thomas Abeel, Jeroen de Ridder, Lucia Peixoto
European Conference on Computational Biology. BMC Bioinform. 10 (S-13) (2009)
Thomas Abeel, Yves Van de Peer, Yvan Saeys
Java-ML: A Machine Learning Library. J. Mach. Learn. Res. 10 (2009)
Yvan Saeys, Thomas Abeel, Yves Van de Peer
Robust Feature Selection Using Ensemble Feature Selection Techniques. ECML/PKDD (2) (2008)
Thomas Abeel, Yvan Saeys, Pierre Rouzé, Yves Van de Peer
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles. ISMB (2008)
Yvan Saeys, Thomas Abeel, Sven Degroeve, Yves Van de Peer
Translation initiation site prediction on a genomic scale: beauty in simplicity. ISMB/ECCB (Supplement of Bioinformatics) (2007)