Jeremy Zucker

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 6

Top Topics

Biological Knowledge

Dynamic Bayesian Networks

High Throughput

Top Venues

ACM Great Lakes Symposium on VLSI

Publications

Yuxin Yang, Zixu Wang, Pegah Ahadian, Abby Jerger, Jeremy Zucker, Song Feng, Feixiong Cheng, Qiang Guan
A Deep Multimodal Representation Learning Framework for Accurate Molecular Properties Prediction. ACM Great Lakes Symposium on VLSI (2024)
Sara Mohammad Taheri, Vartika Tewari, Rohan Kapre, Ehsan Rahiminasab, Karen Sachs, Charles Tapley Hoyt, Jeremy Zucker, Olga Vitek
Optimal adjustment sets for causal query estimation in partially observed biomolecular networks. Bioinform. 39 (Supplement-1) (2023)
Jeremy Zucker, Kaushal Paneri, Sara Mohammad Taheri, Somya Bhargava, Pallavi Kolambkar, Craig Bakker, Jeremy Teuton, Charles Tapley Hoyt, Kristie Oxford, Robert Osazuwa Ness, Olga Vitek
Leveraging Structured Biological Knowledge for Counterfactual Inference: a Case Study of Viral Pathogenesis. CoRR (2021)
Sara Mohammad Taheri, Robert Osazuwa Ness, Jeremy Zucker, Olga Vitek
Do-calculus enables causal reasoning with latent variable models. CoRR (2021)
Jeremy Zucker, Kaushal Paneri, Sara Mohammad Taheri, Somya Bhargava, Pallavi Kolambkar, Craig Bakker, Jeremy Teuton, Charles Tapley Hoyt, Kristie Oxford, Robert Osazuwa Ness, Olga Vitek
Leveraging Structured Biological Knowledge for Counterfactual Inference: A Case Study of Viral Pathogenesis. IEEE Trans. Big Data 7 (1) (2021)
Richard Allen White III, Joseph Brown, Sean Colby, Christopher C. Overall, Joon-Yong Lee, Jeremy Zucker, Kurt R. Glaesemann, Christer Jansson, Janet K. Jansson
ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data. PeerJ Prepr. 5 (2017)
James E. Galagan, Kyle J. Minch, Matthew Peterson, Anna Lyubetskaya, Elham Azizi, Linsday Sweet, Antonio Gomes, Tige R. Rustad, Gregory Dolganov, Irina Glotova, Thomas Abeel, Chris Mahwinney, Adam D. Kennedy, René Allard, William Brabant, Andrew Krueger, Suma Jaini, Brent Honda, Wen-Han Yu, Mark J. Hickey, Jeremy Zucker, Christopher Garay, Brian Weiner, Peter Sisk, Christian Stolte, Jessica K. Winkler, Yves Van de Peer, Paul Iazzetti, Diogo Camacho, Jonathan M. Dreyfuss, Yang Liu, Anca Dorhoi, Hans-Joachim Mollenkopf, Paul Drogaris, Julie Lamontagne, Yiyong Zhou, Julie Piquenot, Sang Tae Park, Sahadevan Raman, Stefan H. E. Kaufmann, Robert P. Mohney, Daniel Chelsky, D. Branch Moody, David R. Sherman, Gary K. Schoolnik
regulatory network and hypoxia. Nat. 499 (7457) (2013)
Sahar Abubucker, Nicola Segata, Johannes Goll, Alyxandria M. Schubert, Jacques Izard, Brandi L. Cantarel, Beltran Rodriguez-Mueller, Jeremy Zucker, Mathangi Thiagarajan, Bernard Henrissat, Owen White, Scott T. Kelley, Barbara A. Methé, Patrick D. Schloss, Dirk Gevers, Makedonka Dautova Mitreva, Curtis Huttenhower
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome. PLoS Comput. Biol. 8 (6) (2012)
Caroline Colijn, Aaron Brandes, Jeremy Zucker, Desmond S. Lun, Brian Weiner, Maha R. Farhat, Tan-Yun Cheng, D. Branch Moody, Megan Murray, James E. Galagan
Mycolic Acid Production. PLoS Comput. Biol. 5 (8) (2009)
Gavin H. Thomas, Jeremy Zucker, Sandy J. Macdonald, Anatoly A. Sorokin, Igor Goryanin, Angela E. Douglas
A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola. BMC Syst. Biol. 3 (2009)
Alan Ruttenberg, Jonathan Rees, Jeremy Zucker
What BioPAX Communicates and how to extend OWL to help it. OWLED (2006)