Curtis Huttenhower

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 9

Top Topics

Top Venues

PLoS Comput. Biol.

Database J. Biol. Databases Curation

Publications

Alexander G. McFarland, Nolan W. Kennedy, Carolyn E. Mills, Danielle Tullman-Ercek, Curtis Huttenhower, Erica M. Hartmann
Density-based binning of gene clusters to infer function or evolutionary history using GeneGrouper. Bioinform. 38 (3) (2022)
Siyuan Ma, Boyu Ren, Himel Mallick, Yo Sup Moon, Emma Schwager, Sagun Maharjan, Timothy L. Tickle, Yiren Lu, Rachel N. Carmody, Eric A. Franzosa, Lucas Janson, Curtis Huttenhower
A statistical model for describing and simulating microbial community profiles. PLoS Comput. Biol. 17 (9) (2021)
Himel Mallick, Ali Rahnavard, Lauren J. McIver, Siyuan Ma, Yancong Zhang, Long H. Nguyen, Timothy L. Tickle, George Weingart, Boyu Ren, Emma H. Schwager, Suvo Chatterjee, Kelsey N. Thompson, Jeremy E. Wilkinson, Ayshwarya Subramanian, Yiren Lu, Levi Waldron, Joseph N. Paulson, Eric A. Franzosa, Héctor Corrada Bravo, Curtis Huttenhower
Multivariable association discovery in population-scale meta-omics studies. PLoS Comput. Biol. 17 (11) (2021)
Yancong Zhang, Kelsey N. Thompson, Curtis Huttenhower, Eric A. Franzosa
Statistical approaches for differential expression analysis in metatranscriptomics. Bioinform. 37 (Supplement) (2021)
Lauren J. McIver, Galeb Abu-Ali, Eric A. Franzosa, Randall Schwager, Xochitl C. Morgan, Levi Waldron, Nicola Segata, Curtis Huttenhower
bioBakery: a meta'omic analysis environment. Bioinform. 34 (7) (2018)
Emma Schwager, Himel Mallick, Steffen Ventz, Curtis Huttenhower
A Bayesian method for detecting pairwise associations in compositional data. PLoS Comput. Biol. 13 (11) (2017)
Soha Hassoun, Curtis Huttenhower
A Workshop on Microbiomics, Metagenomics, and Metabolomics. BCB (2017)
Daniela Börnigen, Svitlana Tyekucheva, Xiaodong Wang, Jennifer R. Rider, Gwo-Shu Lee, Lorelei A. Mucci, Christopher Sweeney, Curtis Huttenhower
Computational Reconstruction of NFκB Pathway Interaction Mechanisms during Prostate Cancer. PLoS Comput. Biol. 12 (4) (2016)
James Kaminski, Molly K. Gibson, Eric A. Franzosa, Nicola Segata, Gautam Dantas, Curtis Huttenhower
High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED. PLoS Comput. Biol. 11 (12) (2015)
Sihai Dave Zhao, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron
Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis. Bioinform. 30 (21) (2014)
Christoph Bernau, Markus Riester, Anne-Laure Boulesteix, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron, Lorenzo Trippa
Cross-study validation for the assessment of prediction algorithms. Bioinform. 30 (12) (2014)
Katherine Huang, Arthur Brady, Anup Mahurkar, Owen White, Dirk Gevers, Curtis Huttenhower, Nicola Segata
MetaRef: a pan-genomic database for comparative and community microbial genomics. Nucleic Acids Res. 42 (Database-Issue) (2014)
Benjamin Frederick Ganzfried, Markus Riester, Benjamin Haibe-Kains, Thomas Risch, Svitlana Tyekucheva, Ina Jazic, Xin Victoria Wang, Mahnaz Ahmadifar, Michael J. Birrer, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron
curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome. Database J. Biol. Databases Curation 2013 (2013)
Regina Joice, Vagheesh Narasimhan, Jacqui Montgomery, Amar Bir Sidhu, Keunyoung Oh, Evan Meyer, Willythssa Pierre-Louis, Karl Seydel, Danny Milner, Kim Williamson, Roger Wiegand, Daouda Ndiaye, Johanna Daily, Dyann Wirth, Terrie Taylor, Curtis Huttenhower, Matthias Marti
Inferring Developmental Stage Composition from Gene Expression in Human Malaria. PLoS Comput. Biol. 9 (12) (2013)
Omry Koren, Dan Knights, Antonio Gonzalez, Levi Waldron, Nicola Segata, Rob Knight, Curtis Huttenhower, Ruth E. Ley
A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets. PLoS Comput. Biol. 9 (1) (2013)
Xochitl C. Morgan, Curtis Huttenhower
Chapter 12: Human Microbiome Analysis. PLoS Comput. Biol. 8 (12) (2012)
Karoline Faust, Jarupon Fah Sathirapongsasuti, Jacques Izard, Nicola Segata, Dirk Gevers, Jeroen Raes, Curtis Huttenhower
Microbial Co-occurrence Relationships in the Human Microbiome. PLoS Comput. Biol. 8 (7) (2012)
Dirk Gevers, Mihai Pop, Patrick D. Schloss, Curtis Huttenhower
Bioinformatics for the Human Microbiome Project. PLoS Comput. Biol. 8 (11) (2012)
Sahar Abubucker, Nicola Segata, Johannes Goll, Alyxandria M. Schubert, Jacques Izard, Brandi L. Cantarel, Beltran Rodriguez-Mueller, Jeremy Zucker, Mathangi Thiagarajan, Bernard Henrissat, Owen White, Scott T. Kelley, Barbara A. Methé, Patrick D. Schloss, Dirk Gevers, Makedonka Dautova Mitreva, Curtis Huttenhower
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome. PLoS Comput. Biol. 8 (6) (2012)
Levi Waldron, Melania Pintilie, Ming-Sound Tsao, Frances A. Shepherd, Curtis Huttenhower, Igor Jurisica
Optimized application of penalized regression methods to diverse genomic data. Bioinform. 27 (24) (2011)
Curtis Huttenhower, Oliver Hofmann
A Quick Guide to Large-Scale Genomic Data Mining. PLoS Comput. Biol. 6 (5) (2010)
Christopher Y. Park, David C. Hess, Curtis Huttenhower, Olga G. Troyanskaya
Simultaneous Genome-Wide Inference of Physical, Genetic, Regulatory, and Functional Pathway Components. PLoS Comput. Biol. 6 (11) (2010)
Ana Pop, Curtis Huttenhower, Anjali Iyer-Pascuzzi, Philip N. Benfey, Olga G. Troyanskaya
Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thaliana. BMC Syst. Biol. 4 (2010)
Matthew A. Hibbs, Chad L. Myers, Curtis Huttenhower, David C. Hess, Kai Li, Amy A. Caudy, Olga G. Troyanskaya
Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis. PLoS Comput. Biol. 5 (3) (2009)
Curtis Huttenhower, Sajid O. Mehmood, Olga G. Troyanskaya
Graphle: Interactive exploration of large, dense graphs. BMC Bioinform. 10 (2009)
Edoardo M. Airoldi, Curtis Huttenhower, David Gresham, Charles Lu, Amy A. Caudy, Maitreya J. Dunham, James R. Broach, David Botstein, Olga G. Troyanskaya
Predicting Cellular Growth from Gene Expression Signatures. PLoS Comput. Biol. 5 (1) (2009)
Curtis Huttenhower, Matthew A. Hibbs, Chad L. Myers, Amy A. Caudy, David C. Hess, Olga G. Troyanskaya
The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction. Bioinform. 25 (18) (2009)
Maria D. Chikina, Curtis Huttenhower, Coleen T. Murphy, Olga G. Troyanskaya
. PLoS Comput. Biol. 5 (6) (2009)
Curtis Huttenhower, K. Tsheko Mutungu, Natasha Indik, Woongcheol Yang, Mark Schroeder, Joshua J. Forman, Olga G. Troyanskaya, Hilary A. Coller
Detailing regulatory networks through large scale data integration. Bioinform. 25 (24) (2009)
Curtis Huttenhower, Mark Schroeder, Maria D. Chikina, Olga G. Troyanskaya
The Sleipnir library for computational functional genomics. Bioinform. 24 (13) (2008)
Curtis Huttenhower, Olga G. Troyanskaya
Assessing the functional structure of genomic data. ISMB (2008)
Matthew A. Hibbs, David C. Hess, Chad L. Myers, Curtis Huttenhower, Kai Li, Olga G. Troyanskaya
Exploring the functional landscape of gene expression: directed search of large microarray compendia. Bioinform. 23 (20) (2007)
Curtis Huttenhower, Avi I. Flamholz, Jessica N. Landis, Sauhard Sahi, Chad L. Myers, Kellen L. Olszewski, Matthew A. Hibbs, Nathan O. Siemers, Olga G. Troyanskaya, Hilary A. Coller
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods. BMC Bioinform. 8 (2007)
Curtis Huttenhower, Matthew A. Hibbs, Chad L. Myers, Olga G. Troyanskaya
A scalable method for integration and functional analysis of multiple microarray datasets. Bioinform. 22 (23) (2006)
Rachel S. G. Sealfon, Matthew A. Hibbs, Curtis Huttenhower, Chad L. Myers, Olga G. Troyanskaya
GOLEM: an interactive graph-based gene-ontology navigation and analysis tool. BMC Bioinform. 7 (2006)
Curtis Huttenhower, Olga G. Troyanskaya
A General Methodology for Integration of Microarray Data. CSB Workshops (2005)
Eric Nyberg, Teruko Mitamura, James P. Callan, Jaime G. Carbonell, Robert E. Frederking, Kevyn Collins-Thompson, Laurie Hiyakumoto, Yifen Huang, Curtis Huttenhower, Scott Judy, Jeongwoo Ko, Anna Kupsc, Lucian Vlad Lita, Vasco Pedro, David Svoboda, Benjamin Van Durme
The JAVELIN Question-Answering System at TREC 2003: A Multi-Strategh Approach with Dynamic Planning. TREC (2003)