Nearest Neighbor Networks: clustering expression data based on gene neighborhoods.
Curtis HuttenhowerAvi I. FlamholzJessica N. LandisSauhard SahiChad L. MyersKellen L. OlszewskiMatthew A. HibbsNathan O. SiemersOlga G. TroyanskayaHilary A. CollerPublished in: BMC Bioinform. (2007)
Keyphrases
- nearest neighbor
- high dimensional data
- data points
- k nearest neighbor
- clustering algorithm
- nearest neighbor algorithm
- k means
- knn
- hierarchical clustering
- gene regulatory networks
- clustering method
- unsupervised learning
- high dimensional
- nearest neighbor search
- self organizing maps
- gene networks
- network analysis
- gene expression data
- cluster analysis
- distance function
- data clustering
- gene expression
- microarray
- neural network
- clustering analysis
- gene expression profiles
- gene expression analysis
- heterogeneous information networks
- interaction networks
- microarray data analysis
- heterogeneous networks
- document clustering
- information theoretic
- index structure
- pairwise