Héctor Corrada Bravo

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 21

Top Topics

Gene Expression

Top Venues

Publications

Aya Abdelsalam Ismail, Julius Adebayo, Héctor Corrada Bravo, Stephen Ra, Kyunghyun Cho
Concept Bottleneck Generative Models. ICLR (2024)
Aya Abdelsalam Ismail, Héctor Corrada Bravo, Soheil Feizi
Improving Deep Learning Interpretability by Saliency Guided Training. NeurIPS (2021)
Aya Abdelsalam Ismail, Héctor Corrada Bravo, Soheil Feizi
Improving Deep Learning Interpretability by Saliency Guided Training. CoRR (2021)
Himel Mallick, Ali Rahnavard, Lauren J. McIver, Siyuan Ma, Yancong Zhang, Long H. Nguyen, Timothy L. Tickle, George Weingart, Boyu Ren, Emma H. Schwager, Suvo Chatterjee, Kelsey N. Thompson, Jeremy E. Wilkinson, Ayshwarya Subramanian, Yiren Lu, Levi Waldron, Joseph N. Paulson, Eric A. Franzosa, Héctor Corrada Bravo, Curtis Huttenhower
Multivariable association discovery in population-scale meta-omics studies. PLoS Comput. Biol. 17 (11) (2021)
Zhe Cui, Jayaram Kancherla, Kyle W. Chang, Niklas Elmqvist, Héctor Corrada Bravo
Proactive visual and statistical analysis of genomic data in Epiviz. Bioinform. 36 (7) (2020)
Hirak Sarkar, Avi Srivastava, Héctor Corrada Bravo, Michael I. Love, Rob Patro
Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data. Bioinform. 36 (Supplement-1) (2020)
Aya Abdelsalam Ismail, Mohamed K. Gunady, Héctor Corrada Bravo, Soheil Feizi
Benchmarking Deep Learning Interpretability in Time Series Predictions. CoRR (2020)
Aya Abdelsalam Ismail, Mohamed K. Gunady, Héctor Corrada Bravo, Soheil Feizi
Benchmarking Deep Learning Interpretability in Time Series Predictions. NeurIPS (2020)
Jayaram Kancherla, Yifan Yang, Hyeyun Chae, Héctor Corrada Bravo
Epiviz File Server: Query, transform and interactively explore data from indexed genomic files. Bioinform. 36 (18) (2020)
Justin Williams, Héctor Corrada Bravo, Jennifer Tom, Joseph N. Paulson
: Simulating longitudinal differential abundance for microbiome data. F1000Research 8 (2019)
Aya Abdelsalam Ismail, Mohamed K. Gunady, Luiz Pessoa, Héctor Corrada Bravo, Soheil Feizi
Input-Cell Attention Reduces Vanishing Saliency of Recurrent Neural Networks. NeurIPS (2019)
Aya Abdelsalam Ismail, Mohamed K. Gunady, Luiz Pessoa, Héctor Corrada Bravo, Soheil Feizi
Input-Cell Attention Reduces Vanishing Saliency of Recurrent Neural Networks. CoRR (2019)
Nathan D. Olson, Nidhi Shah, Jayaram Kancherla, Justin Wagner, Joseph N. Paulson, Héctor Corrada Bravo
metagenomeFeatures: an R package for working with 16S rRNA reference databases and marker-gene survey feature data. Bioinform. 35 (19) (2019)
Mohamed K. Gunady, Stephen M. Mount, Héctor Corrada Bravo
Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis. BMC Bioinform. 20 (1) (2019)
Aya Abdelsalam Ismail, Timothy Wood, Héctor Corrada Bravo
Improving Long-Horizon Forecasts with Expectation-Biased LSTM Networks. CoRR (2018)
Jayaram Kancherla, Alexander Zhang, Brian Gottfried, Héctor Corrada Bravo
Epiviz Web Components: reusable and extensible component library to visualize functional genomic datasets. F1000Research 7 (2018)
Mohamed K. Gunady, Steffen Cornwell, Stephen M. Mount, Héctor Corrada Bravo
Yanagi: Transcript Segment Library Construction for RNA-Seq Quantification. WABI (2017)
Lenwood S. Heath, Héctor Corrada Bravo, Mario Cáccamo, Michael Schatz
Bioinformatics of DNA [Scanning the Issue]. Proc. IEEE 105 (3) (2017)
Solaiappan Manimaran, Heather Selby, Kwame Okrah, Claire Ruberman, Jeffrey T. Leek, John Quackenbush, Benjamin Haibe-Kains, Héctor Corrada Bravo, W. Evan Johnson
BatchQC: interactive software for evaluating sample and batch effects in genomic data. Bioinform. 32 (24) (2016)
Justin Wagner, Joseph N. Paulson, Xiao Wang, Bobby Bhattacharjee, Héctor Corrada Bravo
Privacy-preserving microbiome analysis using secure computation. Bioinform. 32 (12) (2016)
Faezeh Dorri, Lee Mendelowitz, Héctor Corrada Bravo
methylFlow: cell-specific methylation pattern reconstruction from high-throughput bisulfite-converted DNA sequencing. Bioinform. 32 (11) (2016)
Florin Chelaru, Héctor Corrada Bravo
Epiviz: a view inside the design of an integrated visual analysis software for genomics. BMC Bioinform. 16 (S11) (2015)
Martin J. Aryee, Andrew E. Jaffe, Héctor Corrada Bravo, Christine Ladd-Acosta, Andrew P. Feinberg, Kasper D. Hansen, Rafael A. Irizarry
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays. Bioinform. 30 (10) (2014)
Chengxi Ye, Chiaowen Hsiao, Héctor Corrada Bravo
BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution. Bioinform. 30 (9) (2014)
Weiliang Shi, Grace Wahba, Rafael A. Irizarry, Héctor Corrada Bravo, Stephen J. Wright
The partitioned LASSO-patternsearch algorithm with application to gene expression data. BMC Bioinform. 13 (2012)
Héctor Corrada Bravo
Increased Methylation Variation in Epigenetic Domains across Cancer Types. RECOMB (2012)
Héctor Corrada Bravo, Vasyl Pihur, Matthew N. McCall, Rafael A. Irizarry, Jeffrey T. Leek
Gene expression anti-profiles as a basis for accurate universal cancer signatures. BMC Bioinform. 13 (2012)
Héctor Corrada Bravo, Stephen J. Wright, Kevin H. Eng, Sündüz Keles, Grace Wahba
Estimating Tree-Structured Covariance Matrices via Mixed-Integer Programming. AISTATS (2009)
Miguel A. Acevedo, Carlos J. Corrada-Bravo, Héctor Corrada Bravo, Luis J. Villanueva-Rivera, T. Mitchell Aide
Automated classification of bird and amphibian calls using machine learning: A comparison of methods. Ecol. Informatics 4 (4) (2009)
Héctor Corrada Bravo, Raghu Ramakrishnan
Optimizing mpf queries: decision support and probabilistic inference. SIGMOD Conference (2007)
Héctor Corrada Bravo, David Page, Raghu Ramakrishnan, Jude W. Shavlik, Vítor Santos Costa
A Framework for Set-Oriented Computation in Inductive Logic Programming and Its Application in Generalizing Inverse Entailment. ILP (2005)