Mario Cáccamo

Publication Activity (10 Years)

Years Active: 2001-2023
Publications (10 Years): 6

Top Topics

Challenges Facing

Data Integration

Schema Matching

Data Management

Top Venues

Publications

Samuel Martin, Martin Ayling, Livia Patrono, Mario Cáccamo, Pablo Murcia, Richard M. Leggett
Capturing variation in metagenomic assembly graphs with MetaCortex. Bioinform. 39 (1) (2023)
Hugh F. Williamson, Julia Brettschneider, Mario Cáccamo, Robert P. Davey, Carole A. Goble, Paul J. Kersey, Sean T. May, Richard J. Morris, Richard Ostler, Tony P. Pridmore, Christopher J. Rawlings, David J. Studholme, Sotirios A. Tsaftaris, Sabina Leonelli
Data management challenges for artificial intelligence in plant and agricultural research. F1000Research 10 (2021)
Lenwood S. Heath, Héctor Corrada Bravo, Mario Cáccamo, Michael Schatz
Bioinformatics of DNA [Scanning the Issue]. Proc. IEEE 105 (3) (2017)
Paul A. Wilkinson, Mark O. Winfield, Gary L. A. Barker, Simon Tyrrell, Xingdong Bian, Alexandra M. Allen, Amanda Burridge, Jane A. Coghill, Christy Waterfall, Mario Cáccamo, Robert P. Davey, Keith J. Edwards
CerealsDB 3.0: expansion of resources and data integration. BMC Bioinform. 17 (2016)
William Chow, Kim Brugger, Mario Cáccamo, Ian Sealy, James W. Torrance, Kerstin Howe
gEVAL - a web-based browser for evaluating genome assemblies. Bioinform. 32 (16) (2016)
Richard M. Leggett, Darren Heavens, Mario Cáccamo, Matthew D. Clark, Robert P. Davey
NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles. Bioinform. 32 (1) (2016)
Ricardo H. Ramirez-Gonzalez, Cristobal Uauy, Mario Cáccamo
PolyMarker: A fast polyploid primer design pipeline. Bioinform. 31 (12) (2015)
Richard M. Leggett, Bernardo J. Clavijo, Leah Clissold, Matthew D. Clark, Mario Cáccamo
NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries. Bioinform. 30 (4) (2014)
Ricardo H. Ramirez-Gonzalez, Richard M. Leggett, Darren Waite, Anil Thanki, Nizar Drou, Mario Cáccamo, Robert P. Davey
StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics. F1000Research 2 (2013)
Ricardo Ramirez-Gonzalez, Raoul Jean Pierre Bonnal, Mario Cáccamo, Daniel MacLean
Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments. Source Code Biol. Medicine 7 (2012)
Ricardo Ramirez-Gonzalez, Mario Cáccamo, Daniel MacLean
Gee Fu: a sequence version and web-services database tool for genomic assembly, genome feature and NGS data. Bioinform. 27 (19) (2011)
Paul Flicek, Bronwen L. Aken, Kathryn Beal, Benoît Ballester, Mario Cáccamo, Yuan Chen, Laura Clarke, Guy Coates, Fiona Cunningham, Tim Cutts, Thomas A. Down, S. C. Dyer, T. Eyre, Stephen Fitzgerald, Julio Fernandez-Banet, Stefan Gräf, Syed Haider, Martin Hammond, Richard C. G. Holland, Kevin L. Howe, Kerstin Howe, Nathan Johnson, Andrew M. Jenkinson, Andreas Kähäri, Damian Keefe, Felix Kokocinski, Eugene Kulesha, Daniel Lawson, Ian Longden, Karine Megy, Patrick Meidl, Bert Overduin, Anne Parker, Bethan Pritchard, Andreas Prlic, S. Rice, Daniel Rios, Michael Schuster, Ian Sealy, Guy Slater, Damian Smedley, Giulietta Spudich, Stephen J. Trevanion, Albert J. Vilella, Jan Vogel, Simon White, M. Wood, Ewan Birney, Tony Cox, Val Curwen, Richard Durbin, Xosé M. Fernández-Suárez, Javier Herrero, Tim J. P. Hubbard, Arek Kasprzyk, Glenn Proctor, James A. Smith, Abel Ureta-Vidal, Stephen M. J. Searle
Ensembl 2008. Nucleic Acids Res. 36 (Database-Issue) (2008)
Tim J. P. Hubbard, Bronwen L. Aken, Kathryn Beal, Benoît Ballester, Mario Cáccamo, Yuan Chen, Laura Clarke, Guy Coates, Fiona Cunningham, Tim Cutts, Thomas A. Down, S. C. Dyer, Stephen Fitzgerald, Julio Fernandez-Banet, Stefan Gräf, Syed Haider, Martin Hammond, Javier Herrero, Richard C. G. Holland, Kevin L. Howe, Kerstin Howe, Nathan Johnson, Andreas Kähäri, Damian Keefe, Felix Kokocinski, Eugene Kulesha, Daniel Lawson, Ian Longden, Craig Melsopp, Karine Megy, Patrick Meidl, Bert Overduin, Anne Parker, Andreas Prlic, S. Rice, Daniel Rios, Michael Schuster, Ian Sealy, Jessica Severin, Guy Slater, Damian Smedley, Giulietta Spudich, Stephen J. Trevanion, Albert J. Vilella, Jan Vogel, Simon White, M. Wood, Tony Cox, Val Curwen, Richard Durbin, Xosé M. Fernández-Suárez, Paul Flicek, Arek Kasprzyk, Glenn Proctor, Stephen M. J. Searle, James A. Smith, Abel Ureta-Vidal, Ewan Birney
Ensembl 2007. Nucleic Acids Res. 35 (Database-Issue) (2007)
Ewan Birney, T. Daniel Andrews, Mario Cáccamo, Yuan Chen, Laura Clarke, Guy Coates, Tony Cox, Fiona Cunningham, Val Curwen, Tim Cutts, Thomas A. Down, Richard Durbin, Xosé M. Fernández-Suárez, Paul Flicek, Stefan Gräf, Martin Hammond, Javier Herrero, Kevin L. Howe, Vivek Iyer, Kerstin Jekosch, Andreas Kähäri, Arek Kasprzyk, Damian Keefe, Felix Kokocinski, Eugene Kulesha, D. London, Ian Longden, Craig Melsopp, Patrick Meidl, Bert Overduin, Anne Parker, Glenn Proctor, Andreas Prlic, Mark Rae, Daniel Rios, Seth Redmond, Michael Schuster, Ian Sealy, Stephen M. J. Searle, Jessica Severin, Guy Slater, Damian Smedley, James A. Smith, Arne Stabenau, Jim Stalker, Stephen J. Trevanion, Abel Ureta-Vidal, Jan Vogel, Simon White, Cara Woodwark, Tim J. P. Hubbard
Ensembl 2006. Nucleic Acids Res. 34 (Database-Issue) (2006)
Tim J. P. Hubbard, D. Andrews, Mario Cáccamo, Graham Cameron, Yuan Chen, Michele E. Clamp, Laura Clarke, Guy Coates, Tony Cox, Fiona Cunningham, Val Curwen, Tim Cutts, Thomas A. Down, Richard Durbin, Xosé M. Fernández-Suárez, James G. R. Gilbert, Martin Hammond, Javier Herrero, H. Hotz, Kevin L. Howe, Vivek Iyer, Kerstin Jekosch, Andreas Kähäri, Arek Kasprzyk, Damian Keefe, Stephen Keenan, Felix Kokocinski, D. London, Ian Longden, Graham P. McVicker, Craig Melsopp, Patrick Meidl, Simon C. Potter, Glenn Proctor, Mark Rae, Daniel Rios, Michael Schuster, Stephen M. J. Searle, Jessica Severin, Guy Slater, Damian Smedley, James A. Smith, William Spooner, Arne Stabenau, Jim Stalker, R. Storey, Stephen J. Trevanion, Abel Ureta-Vidal, Jan Vogel, Simon White, Cara Woodwark, Ewan Birney
Ensembl 2005. Nucleic Acids Res. 33 (Database-Issue) (2005)
Zemin Ning, Mario Cáccamo, James C. Mullikin
ssahaSNP A Polymorphism Detection Tool on a Whole Genome Scale. CSB Workshops (2005)
Mario Cáccamo, Glynn Winskel
Limit Preservation from Naturality. CTCS (2004)
Ewan Birney, T. Daniel Andrews, Paul Bevan, Mario Cáccamo, Graham Cameron, Yuan Chen, Laura Clarke, Guy Coates, Tony Cox, James A. Cuff, Val Curwen, Tim Cutts, Thomas A. Down, Richard Durbin, Eduardo Eyras, Xosé M. Fernández-Suárez, Paul J. Gane, B. Gibbins, James G. R. Gilbert, Martin Hammond, H. Hotz, Vivek Iyer, Andreas Kähäri, Kerstin Jekosch, Arek Kasprzyk, Damian Keefe, Stephen Keenan, Heikki Lehväslaiho, Graham P. McVicker, Craig Melsopp, Patrick Meidl, Emmanuel Mongin, Roger Pettett, Simon C. Potter, Glenn Proctor, Mark Rae, Stephen M. J. Searle, Guy Slater, Damian Smedley, James A. Smith, William Spooner, Arne Stabenau, Jim Stalker, R. Storey, Abel Ureta-Vidal, Cara Woodwark, Michele E. Clamp, Tim J. P. Hubbard
Ensembl 2004. Nucleic Acids Res. 32 (Database-Issue) (2004)
Mario Cáccamo, Glynn Winskel
A Higher-Order Calculus for Categories. TPHOLs (2001)