Avi Srivastava

Publication Activity (10 Years)

Years Active: 2014-2022
Publications (10 Years): 11

Top Topics

Medical Image Retrieval

Equivalence Class

Statistical Models

Compressed Domain

Top Venues

Int. J. Bioinform. Res. Appl.

Publications

Wancen Mu, Hirak Sarkar, Avi Srivastava, Kwangbom Choi, Rob Patro, Michael I. Love
Airpart: interpretable statistical models for analyzing allelic imbalance in single-cell datasets. Bioinform. 38 (10) (2022)
Charlotte Soneson, Avi Srivastava, Rob Patro, Michael B. Stadler
Preprocessing choices affect RNA velocity results for droplet scRNA-seq data. PLoS Comput. Biol. 17 (1) (2021)
Scott Van Buren, Hirak Sarkar, Avi Srivastava, Naim U. Rashid, Rob Patro, Michael I. Love
Compression of quantification uncertainty for scRNA-seq counts. Bioinform. 37 (12) (2021)
Hirak Sarkar, Avi Srivastava, Héctor Corrada Bravo, Michael I. Love, Rob Patro
Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data. Bioinform. 36 (Supplement-1) (2020)
Avi Srivastava, Laraib Malik, Hirak Sarkar, Rob Patro
A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification. Bioinform. 36 (Supplement-1) (2020)
Hirak Sarkar, Avi Srivastava, Rob Patro
Minnow: a principled framework for rapid simulation of dscRNA-seq data at the read level. Bioinform. 35 (14) (2019)
Fatemeh Almodaresi, Hirak Sarkar, Avi Srivastava, Rob Patro
A space and time-efficient index for the compacted colored de Bruijn graph. Bioinform. 34 (13) (2018)
Sheetal Pandrekar Mangesh, Xin Chen, Gaurav Gopalkrishna, Avi Srivastava, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
Social Media Based Analysis of Opioid Epidemic Using Reddit. AMIA (2018)
Mohsen Zakeri, Avi Srivastava, Fatemeh Almodaresi, Rob Patro
Improved data-driven likelihood factorizations for transcript abundance estimation. Bioinform. 33 (14) (2017)
Avi Srivastava, Hirak Sarkar, Laraib Malik, Rob Patro
Accurate, Fast and Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes. CoRR (2016)
Avi Srivastava, Hirak Sarkar, Nitish Gupta, Rob Patro
RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes. Bioinform. 32 (12) (2016)
Kuldeep Yadav, Avi Srivastava, Ankush Mittal, M. A. Ansari
Texture-based medical image retrieval in compressed domain using compressive sensing. Int. J. Bioinform. Res. Appl. 10 (2) (2014)