A space and time-efficient index for the compacted colored de Bruijn graph.

Fatemeh Almodaresi Hirak Sarkar Avi Srivastava Rob Patro

Published in: Bioinform. (2018)

Keyphrases

graph structure
space requirements
equivalence classes
weighted graph
graphical models
structured data
vector space
database
neural network
index structure
space time
parameter space
graph theory
directed acyclic graph
graph search
nearest neighbor graph