Hirak Sarkar

Publication Activity (10 Years)

Years Active: 2013-2024
Publications (10 Years): 13

Top Topics

Voronoi Diagram

Equivalence Class

Top Venues

Publications

Uthsav Chitra, Brian J. Arnold, Hirak Sarkar, Cong Ma, Sereno Lopez-Darwin, Kohei Sanno, Benjamin J. Raphael
Mapping the Topography of Spatial Gene Expression with Interpretable Deep Learning. RECOMB (2024)
Wancen Mu, Hirak Sarkar, Avi Srivastava, Kwangbom Choi, Rob Patro, Michael I. Love
Airpart: interpretable statistical models for analyzing allelic imbalance in single-cell datasets. Bioinform. 38 (10) (2022)
Scott Van Buren, Hirak Sarkar, Avi Srivastava, Naim U. Rashid, Rob Patro, Michael I. Love
Compression of quantification uncertainty for scRNA-seq counts. Bioinform. 37 (12) (2021)
Hirak Sarkar, Avi Srivastava, Héctor Corrada Bravo, Michael I. Love, Rob Patro
Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data. Bioinform. 36 (Supplement-1) (2020)
Rupak Sarkar, Hirak Sarkar, Sayantan Mahinder, Ashiqur R. KhudaBukhsh
Social Media Attributions in the Context of Water Crisis. CoRR (2020)
Avi Srivastava, Laraib Malik, Hirak Sarkar, Rob Patro
A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification. Bioinform. 36 (Supplement-1) (2020)
Rupak Sarkar, Sayantan Mahinder, Hirak Sarkar, Ashiqur R. KhudaBukhsh
Social Media Attributions in the Context of Water Crisis. EMNLP (1) (2020)
Hirak Sarkar, Avi Srivastava, Rob Patro
Minnow: a principled framework for rapid simulation of dscRNA-seq data at the read level. Bioinform. 35 (14) (2019)
Hirak Sarkar, Mohsen Zakeri, Laraib Malik, Rob Patro
Towards Selective-Alignment: Bridging the Accuracy Gap between Alignment-Based and Alignment-Free Transcript Quantification. BCB (2018)
Fatemeh Almodaresi, Hirak Sarkar, Avi Srivastava, Rob Patro
A space and time-efficient index for the compacted colored de Bruijn graph. Bioinform. 34 (13) (2018)
Hirak Sarkar, Rob Patro
Quark enables semi-reference-based compression of RNA-seq data. Bioinform. 33 (21) (2017)
Avi Srivastava, Hirak Sarkar, Laraib Malik, Rob Patro
Accurate, Fast and Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes. CoRR (2016)
Avi Srivastava, Hirak Sarkar, Nitish Gupta, Rob Patro
RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes. Bioinform. 32 (12) (2016)
Sayan Bandyapadhyay, Aritra Banik, Sandip Das, Hirak Sarkar
Voronoi game on graphs. Theor. Comput. Sci. 562 (2015)
Sayan Bandyapadhyay, Aritra Banik, Sandip Das, Hirak Sarkar
Voronoi Game on Graphs. CoRR (2014)
Sayan Bandyapadhyay, Aritra Banik, Sandip Das, Hirak Sarkar
Voronoi Game on Graphs. WALCOM (2013)