Joel H. Saltz

ORCID

Publication Activity (10 Years)

Years Active: 1985-2023
Publications (10 Years): 106

Top Venues

CoRR

AMIA

J. Am. Medical Informatics Assoc.

Medical Imaging: Digital Pathology

Publications

Shahira Abousamra, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen
Topology-Guided Multi-Class Cell Context Generation for Digital Pathology. CVPR (2023)
Alexandros Graikos, Srikar Yellapragada, Minh-Quan Le, Saarthak Kapse, Prateek Prasanna, Joel H. Saltz, Dimitris Samaras
Learned representation-guided diffusion models for large-image generation. CoRR (2023)
Srikar Yellapragada, Alexandros Graikos, Prateek Prasanna, Tahsin M. Kurç, Joel H. Saltz, Dimitris Samaras
PathLDM: Text conditioned Latent Diffusion Model for Histopathology. CoRR (2023)
Jingwei Zhang, Saarthak Kapse, Ke Ma, Prateek Prasanna, Joel H. Saltz, Maria Vakalopoulou, Dimitris Samaras
Prompt-MIL: Boosting Multi-Instance Learning Schemes via Task-specific Prompt Tuning. CoRR (2023)
Shahira Abousamra, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen
Topology-Guided Multi-Class Cell Context Generation for Digital Pathology. CoRR (2023)
Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 30 (12) (2023)
Saarthak Kapse, Srijan Das, Jingwei Zhang, Rajarsi R. Gupta, Joel H. Saltz, Dimitris Samaras, Prateek Prasanna
Attention De-sparsification Matters: Inducing Diversity in Digital Pathology Representation Learning. CoRR (2023)
Jingwei Zhang, Ke Ma, Saarthak Kapse, Joel H. Saltz, Maria Vakalopoulou, Prateek Prasanna, Dimitris Samaras
SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology. ISIC/Care-AI/MedAGI/DeCaF@MICCAI (2023)
Jakub R. Kaczmarzyk, Rajarsi Gupta, Tahsin M. Kurç, Shahira Abousamra, Joel H. Saltz, Peter K. Koo
ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification. Comput. Methods Programs Biomed. 239 (2023)
Jingwei Zhang, Ke Ma, Saarthak Kapse, Joel H. Saltz, Maria Vakalopoulou, Prateek Prasanna, Dimitris Samaras
SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology. CoRR (2023)
Jakub R. Kaczmarzyk, Alan O'Callaghan, Fiona Inglis, Tahsin M. Kurç, Rajarsi Gupta, Erich Bremer, Peter Bankhead, Joel H. Saltz
Open and reusable deep learning for pathology with WSInfer and QuPath. CoRR (2023)
Jingwei Zhang, Saarthak Kapse, Ke Ma, Prateek Prasanna, Maria Vakalopoulou, Joel H. Saltz, Dimitris Samaras
Precise Location Matching Improves Dense Contrastive Learning in Digital Pathology. IPMI (2023)
Erich Bremer, Tammy DiPrima, Joseph Balsamo, Jonas S. Almeida, Rajarsi Gupta, Joel H. Saltz
Halcyon - A Pathology Imaging and Feature analysis and Management System. CoRR (2023)
Saarthak Kapse, Pushpak Pati, Srijan Das, Jingwei Zhang, Chao Chen, Maria Vakalopoulou, Joel H. Saltz, Dimitris Samaras, Rajarsi R. Gupta, Prateek Prasanna
SI-MIL: Taming Deep MIL for Self-Interpretability in Gigapixel Histopathology. CoRR (2023)
Vu Nguyen, Prantik Howlader, Le Hou, Dimitris Samaras, Rajarsi R. Gupta, Joel H. Saltz
Few Shot Hematopoietic Cell Classification. MIDL (2023)
Shahira Abousamra, Danielle Fassler, Jiachen Yao, Rajarsi R. Gupta, Tahsin M. Kurç, Luisa F. Escobar-Hoyos, Dimitris Samaras, Kenneth Shroyer, Joel H. Saltz, Chao Chen
Unsupervised Stain Decomposition via Inversion Regulation for Multiplex Immunohistochemistry Images. MIDL (2023)
Jingwei Zhang, Saarthak Kapse, Ke Ma, Prateek Prasanna, Joel H. Saltz, Maria Vakalopoulou, Dimitris Samaras
Prompt-MIL: Boosting Multi-instance Learning Schemes via Task-Specific Prompt Tuning. MICCAI (8) (2023)
Jakub R. Kaczmarzyk, Tahsin M. Kurç, Shahira Abousamra, Rajarsi Gupta, Joel H. Saltz, Peter K. Koo
Evaluating histopathology transfer learning with ChampKit. CoRR (2022)
André L. S. Meirelles, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
Effective active learning in digital pathology: A case study in tumor infiltrating lymphocytes. Comput. Methods Programs Biomed. 220 (2022)
Rajarsi Gupta, Jakub Kaczmarzyk, Soma Kobayashi, Tahsin M. Kurç, Joel H. Saltz
AI and Pathology: Steering Treatment and Predicting Outcomes. CoRR (2022)
Souradeep Chakraborty, Ke Ma, Rajarsi Gupta, Beatrice Knudsen, Gregory J. Zelinsky, Joel H. Saltz, Dimitris Samaras
Visual attention analysis of pathologists examining whole slide images of Prostate cancer. CoRR (2022)
Souradeep Chakraborty, Rajarsi Gupta, Ke Ma, Darshana Govind, Pinaki Sarder, Won-Tak Choi, Waqas Mahmud, Eric Yee, Felicia Allard, Beatrice Knudsen, Gregory J. Zelinsky, Joel H. Saltz, Dimitris Samaras
Predicting the Visual Attention of Pathologists Evaluating Whole Slide Images of Cancer. MOVI@MICCAI (2022)
Mahmudul Hasan, Jakub R. Kaczmarzyk, David Paredes, Lyanne Oblein, Jaymie Oentoro, Shahira Abousamra, Michael Horowitz, Dimitris Samaras, Chao Chen, Tahsin M. Kurç, Kenneth R. Shroyer, Joel H. Saltz
A Novel Framework for Characterization of Tumor-Immune Spatial Relationships in Tumor Microenvironment. CoRR (2022)
Katie R. Bradwell, Jacob T. Wooldridge, Benjamin R. C. Amor, Tellen D. Bennett, Adit Anand, Carolyn Bremer, Yun Jae Yoo, Zhenglong Qian, Steven G. Johnson, Emily R. Pfaff, Andrew T. Girvin, Amin Manna, Emily Niehaus, Stephanie S. Hong, Xiaohan Tanner Zhang, Richard L. Zhu, Mark Bissell, Nabeel Qureshi, Joel H. Saltz, Melissa A. Haendel, Christopher G. Chute, Harold P. Lehmann, Richard A. Moffitt
Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset. J. Am. Medical Informatics Assoc. 29 (7) (2022)
Ujjwal Baid, Sarthak Pati, Tahsin M. Kurç, Rajarsi Gupta, Erich Bremer, Shahira Abousamra, Siddhesh P. Thakur, Joel H. Saltz, Spyridon Bakas
Federated Learning for the Classification of Tumor Infiltrating Lymphocytes. CoRR (2022)
Saumya Gupta, Xiaoling Hu, James Kaan, Michael Jin, Mutshipay Mpoy, Katherine Chung, Gagandeep Singh, Mary M. Saltz, Tahsin M. Kurç, Joel H. Saltz, Apostolos Tassiopoulos, Prateek Prasanna, Chao Chen
Learning Topological Interactions for Multi-Class Medical Image Segmentation. CoRR (2022)
Praphulla M. S. Bhawsar, Erich Bremer, Máire A. Duggan, Stephen J. Chanock, Montserrat Garcia-Closas, Joel H. Saltz, Jonas S. Almeida
ImageBox3: No-Server Tile Serving to Traverse Whole Slide Images on the Web. CoRR (2022)
Saumya Gupta, Xiaoling Hu, James Kaan, Michael Jin, Mutshipay Mpoy, Katherine Chung, Gagandeep Singh, Mary M. Saltz, Tahsin M. Kurç, Joel H. Saltz, Apostolos Tassiopoulos, Prateek Prasanna, Chao Chen
Learning Topological Interactions for Multi-Class Medical Image Segmentation. ECCV (24) (2022)
Jingwei Zhang, Saarthak Kapse, Ke Ma, Prateek Prasanna, Maria Vakalopoulou, Joel H. Saltz, Dimitris Samaras
Precise Location Matching Improves Dense Contrastive Learning in Digital Pathology. CoRR (2022)
Jason A. Thomas, Randi E. Foraker, Noa Zamstein, Jon D. Morrow, Philip R. O. Payne, Adam B. Wilcox, Melissa A. Haendel, Christopher G. Chute, Kenneth R. Gersing, Anita Walden, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Hongfang Liu, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Justin Starren, Christine Suver, Chunlei Wu, Davera Gabriel, Stephanie S. Hong, Kristin Kostka, Harold P. Lehmann, Richard A. Moffitt, Michele Morris, Matvey B. Palchuk, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Mark M. Bissell, Marshall Clark, Andrew T. Girvin, Adam M. Lee, Robert T. Miller, Kellie M. Walters, Yooree Chae, Connor Cook, Alexandra Dest, Racquel R. Dietz, Thomas Dillon, Patricia A. Francis, Rafael Fuentes, Alexis Graves, Andrew J. Neumann, Shawn T. O'Neil, Usman Sheikh, Andréa M. Volz, Elizabeth Zampino, Christopher P. Austin, Samuel Bozzette, Mariam Deacy, Nicole Garbarini, Michael G. Kurilla, Sam G. Michael, Joni L. Rutter, Meredith Temple-O'Connor, Katie Rebecca Bradwell, Amin Manna, Nabeel Qureshi, Mary Morrison Saltz, Julie A. McMurry, Carolyn Bramante, Jeremy Richard Harper, Wenndy Hernandez, Farrukh M. Koraishy, Federico Mariona, Saidulu Mattapally, Amit Saha, Satyanarayana Vedula, Yujuan Fu, Nisha Mathews, Ofer Mendelevitch
Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 29 (8) (2022)
Souradeep Chakraborty, Ke Ma, Rajarsi Gupta, Beatrice Knudsen, Gregory J. Zelinsky, Joel H. Saltz, Dimitris Samaras
Visual Attention Analysis Of Pathologists Examining Whole Slide Images Of Prostate Cancer. ISBI (2022)
Jingwei Zhang, Xin Zhang, Ke Ma, Rajarsi Gupta, Joel H. Saltz, Maria Vakalopoulou, Dimitris Samaras
Gigapixel Whole-Slide Images Classification Using Locally Supervised Learning. MICCAI (2) (2022)
Jingwei Zhang, Xin Zhang, Ke Ma, Rajarsi Gupta, Joel H. Saltz, Maria Vakalopoulou, Dimitris Samaras
Gigapixel Whole-Slide Images Classification using Locally Supervised Learning. CoRR (2022)
Willian Barreiros Jr., Alba C. M. A. Melo, Jun Kong, Renato Ferreira, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
Efficient microscopy image analysis on CPU-GPU systems with cost-aware irregular data partitioning. J. Parallel Distributed Comput. 164 (2022)
Xinyu Dong, Jianyuan Deng, Wei Hou, Sina Rashidian, Richard N. Rosenthal, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
Predicting opioid overdose risk of patients with opioid prescriptions using electronic health records based on temporal deep learning. J. Biomed. Informatics 116 (2021)
Jeremias M. Gomes, Jun Kong, Tahsin M. Kurç, Alba C. M. A. Melo, Renato Ferreira, Joel H. Saltz, George Teodoro
Building robust pathology image analyses with uncertainty quantification. Comput. Methods Programs Biomed. 208 (2021)
Xinyu Dong, Jianyuan Deng, Sina Rashidian, Kayley Abell-Hart, Wei Hou, Richard N. Rosenthal, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
Identifying risk of opioid use disorder for patients taking opioid medications with deep learning. J. Am. Medical Informatics Assoc. 28 (8) (2021)
Shahira Abousamra, David Belinsky, John S. Van Arnam, Felicia Allard, Eric Yee, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen
Multi-Class Cell Detection Using Spatial Context Representation. ICCV (2021)
Aishik Konwer, Joseph Bae, Gagandeep Singh, Rishabh Gattu, Syed Ali, Jeremy Green, Tej Phatak, Amit Gupta, Chao Chen, Joel H. Saltz, Prateek Prasanna
Predicting COVID-19 Lung Infiltrate Progression on Chest Radiographs Using Spatio-temporal LSTM based Encoder-Decoder Network. MIDL (2021)
Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Philip R. O. Payne, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Christine Suver, John Wilbanks, Adam B. Wilcox, Andrew E. Williams, Chunlei Wu, Clair Blacketer, Robert L. Bradford, James J. Cimino, Marshall Clark, Evan W. Colmenares, Patricia A. Francis, Davera Gabriel, Alexis Graves, Raju Hemadri, Stephanie S. Hong, George Hripcsak, Dazhi Jiao, Jeffrey G. Klann, Kristin Kostka, Adam M. Lee, Harold P. Lehmann, Lora Lingrey, Robert T. Miller, Michele Morris, Shawn N. Murphy, Karthik Natarajan, Matvey B. Palchuk, Usman Sheikh, Harold Solbrig, Shyam Visweswaran, Anita Walden, Kellie M. Walters, Griffin M. Weber, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin Amor, Andrew T. Girvin, Amin Manna, Nabeel Qureshi, Michael G. Kurilla, Sam G. Michael, Lili M. Portilla, Joni L. Rutter, Christopher P. Austin, Ken R. Gersing
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment. J. Am. Medical Informatics Assoc. 28 (3) (2021)
Siao Sun, Fusheng Wang, Sina Rashidian, Tahsin M. Kurç, Kayley Abell-Hart, Janos G. Hajagos, Wei Zhu, Mary M. Saltz, Joel H. Saltz
Generating Longitudinal Synthetic EHR Data with Recurrent Autoencoders and Generative Adversarial Networks. AMIA (2021)
Sritha Rajupet, Rachel Wong, Donna Moller, Lisa Maldonado, Tricia Weiss, Tahsin M. Kurç, Janos G. Hajagos, Hasit Shah, Mary M. Saltz, Joel H. Saltz, Veena Lingam
Informatics to Power Post-COVID Care: A Framework for Patient Care and Secondary Data Use. AMIA (2021)
Jingwei Zhang, Ke Ma, John S. Van Arnam, Rajarsi Gupta, Joel H. Saltz, Maria Vakalopoulou, Dimitris Samaras
A Joint Spatial and Magnification Based Attention Framework for Large Scale Histopathology Classification. CVPR Workshops (2021)
Siao Sun, Fusheng Wang, Sina Rashidian, Tahsin M. Kurç, Kayley Abell-Hart, Janos G. Hajagos, Wei Zhu, Mary M. Saltz, Joel H. Saltz
Generating Longitudinal Synthetic EHR Data with Recurrent Autoencoders and Generative Adversarial Networks. Poly/DMAH@VLDB (2021)
Ana Gainaru, Dmitry Ganyushin, Bing Xie, Tahsin M. Kurç, Joel H. Saltz, Sarp Oral, Norbert Podhorszki, Franz Poeschel, Axel Huebl, Scott Klasky
Understanding and Leveraging the I/O Patterns of Emerging Machine Learning Analytics. SMC (2021)
Shahira Abousamra, David Belinsky, John S. Van Arnam, Felicia Allard, Eric Yee, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen
Multi-Class Cell Detection Using Spatial Context Representation. CoRR (2021)
Sina Rashidian, Fusheng Wang, Richard A. Moffitt, Victor Garcia, Anurag Dutt, Wei Chang, Vishwam Pandya, Janos G. Hajagos, Mary M. Saltz, Joel H. Saltz
SMOOTH-GAN: Towards Sharp and Smooth Synthetic EHR Data Generation. AIME (2020)
Le Hou, Rajarsi Gupta, John S. Van Arnam, Yuwei Zhang, Kaustubh Sivalenka, Dimitris Samaras, Tahsin M. Kurç, Joel H. Saltz
Dataset of Segmented Nuclei in Hematoxylin and Eosin Stained Histopathology Images of 10 Cancer Types. CoRR (2020)
Willian Barreiros Jr., Jeremias Moreira, Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz, George Teodoro
Optimizing parameter sensitivity analysis of large-scale microscopy image analysis workflows with multilevel computation reuse. Concurr. Comput. Pract. Exp. 32 (2) (2020)
Andreas S. Panayides, Amir A. Amini, Nenad D. Filipovic, Ashish Sharma, Sotirios A. Tsaftaris, Alistair A. Young, David J. Foran, Nhan Do, Spyretta Golemati, Tahsin M. Kurç, Kun Huang, Konstantina S. Nikita, Ben P. Veasey, Michalis E. Zervakis, Joel H. Saltz, Constantinos S. Pattichis
AI in Medical Imaging Informatics: Current Challenges and Future Directions. IEEE J. Biomed. Health Informatics 24 (7) (2020)
Shahira Abousamra, Danielle Fassler, Le Hou, Yuwei Zhang, Rajarsi Gupta, Tahsin M. Kurç, Luisa F. Escobar-Hoyos, Dimitris Samaras, Beatrice Knudson, Kenneth Shroyer, Joel H. Saltz, Chao Chen
Weakly-Supervised Deep Stain Decomposition for Multiplex IHC Images. ISBI (2020)
David Paredes, Prateek Prasanna, Christina Preece, Rajarsi Gupta, Farzad Fereidouni, Dimitris Samaras, Tahsin M. Kurç, Richard M. Levenson, Patricia Thompson-Carino, Joel H. Saltz, Chao Chen
Automated Assessment of the Curliness of Collagen Fiber in Breast Cancer. ECCV Workshops (1) (2020)
Erich Bremer, Jonas S. Almeida, Joel H. Saltz
Representing Whole Slide Cancer Image Features with Hilbert Curves. CoRR (2020)
Xinyu Dong, Jianyuan Deng, Sina Rashidian, Kayley Abell-Hart, Wei Hou, Richard N. Rosenthal, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
Identifying Risk of Opioid Use Disorder for Patients Taking Opioid Medications with Deep Learning. CoRR (2020)
Rafael Marconi Ramos, Célia Ghedini Ralha, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
Increasing Accuracy of Medical CNN Applying Optimization Algorithms: An Image Classification Case. BRACIS (2019)
Han Le, Rajarsi R. Gupta, Le Hou, Shahira Abousamra, Danielle Fassler, Tahsin M. Kurç, Dimitris Samaras, Rebecca Batiste, Tianhao Zhao, Alison L. Van Dyke, Ashish Sharma, Erich Bremer, Jonas S. Almeida, Joel H. Saltz
Utilizing Automated Breast Cancer Detection to Identify Spatial Distributions of Tumor Infiltrating Lymphocytes in Invasive Breast Cancer. CoRR (2019)
Robert M. Patton, Shahira Abousamra, Dimitris Samaras, Joel H. Saltz, J. Travis Johnston, Steven R. Young, Catherine D. Schuman, Thomas E. Potok, Derek C. Rose, Seung-Hwan Lim, Junghoon Chae, Le Hou
Exascale Deep Learning to Accelerate Cancer Research. IEEE BigData (2019)
Robert M. Patton, J. Travis Johnston, Steven R. Young, Catherine D. Schuman, Thomas E. Potok, Derek C. Rose, Seung-Hwan Lim, Junghoon Chae, Le Hou, Shahira Abousamra, Dimitris Samaras, Joel H. Saltz
Exascale Deep Learning to Accelerate Cancer Research. CoRR (2019)
Maozheng Zhao, Le Hou, Han Le, Dimitris Samaras, Nebojsa Jojic, Danielle Fassler, Tahsin M. Kurç, Rajarsi R. Gupta, Kolya Malkin, Shahira Abousamra, Shroyer Kenneth, Joel H. Saltz
Label Super Resolution with Inter-Instance Loss. CoRR (2019)
Tahsin M. Kurç, Ashish Sharma, Rajarsi Gupta, Le Hou, Han Le, Shahira Abousamra, Erich Bremer, Ryan Birmingham, Tammy Diprima, Nan Li, Feiqiao Wang, Joseph Balsamo, Whitney Bremer, Dimitris Samaras, Joel H. Saltz
From Whole Slide Tissues to Knowledge: Mapping Sub-cellular Morphology of Cancer. BrainLes@MICCAI (2) (2019)
Kolya Malkin, Caleb Robinson, Le Hou, Rachel Soobitsky, Jacob Czawlytko, Dimitris Samaras, Joel H. Saltz, Lucas Joppa, Nebojsa Jojic
Label super-resolution networks. ICLR (Poster) (2019)
Han Le, Dimitris Samaras, Tahsin M. Kurç, Rajarsi P. Gupta, Kenneth Shroyer, Joel H. Saltz
Pancreatic Cancer Detection in Whole Slide Images Using Noisy Label Annotations. MICCAI (1) (2019)
Xinyu Dong, Sina Rashidian, Yu Wang, Janos G. Hajagos, Xia Zhao, Richard N. Rosenthal, Jun Kong, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
Machine Learning Based Opioid Overdose Prediction Using Electronic Health Records. AMIA (2019)
Le Hou, Vu Nguyen, Ariel B. Kanevsky, Dimitris Samaras, Tahsin M. Kurç, Tianhao Zhao, Rajarsi R. Gupta, Yi Gao, Wenjin Chen, David J. Foran, Joel H. Saltz
Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images. Pattern Recognit. 86 (2019)
Le Hou, Ayush Agarwal, Dimitris Samaras, Tahsin M. Kurç, Rajarsi R. Gupta, Joel H. Saltz
Robust Histopathology Image Analysis: To Label or to Synthesize? CVPR (2019)
Jeremias M. Gomes, Willian Barreiros Jr., Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Joel H. Saltz, George Teodoro
Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows. Comput. Biol. Medicine 108 (2019)
Paola A. Buitrago, Nicholas A. Nystrom, Rajarsi Gupta, Joel H. Saltz
Delivering Scalable Deep Learning to Research with Bridges-AI. CARLA (2019)
Luis F. R. Taveira, Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Erich Bremer, Joel H. Saltz, George Teodoro
Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows. J. Digit. Imaging 32 (3) (2019)
Shahira Abousamra, Le Hou, Rajarsi R. Gupta, Chao Chen, Dimitris Samaras, Tahsin M. Kurç, Rebecca Batiste, Tianhao Zhao, Shroyer Kenneth, Joel H. Saltz
Learning from Thresholds: Fully Automated Classification of Tumor Infiltrating Lymphocytes for Multiple Cancer Types. CoRR (2019)
Eduardo Scartezini, Willian Barreiros Jr., Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz, George Teodoro
Run-time Parameter Sensitivity Analysis Optimizations. CoRR (2019)
Mark Asch, Terry Moore, Rosa M. Badia, Micah Beck, Peter H. Beckman, T. Bidot, François Bodin, Franck Cappello, Alok N. Choudhary, Bronis R. de Supinski, Ewa Deelman, Jack J. Dongarra, Anshu Dubey, Geoffrey C. Fox, H. Fu, Sergi Girona, William Gropp, Michael A. Heroux, Yutaka Ishikawa, Katarzyna Keahey, David E. Keyes, Bill Kramer, J.-F. Lavignon, Y. Lu, Satoshi Matsuoka, Bernd Mohr, Daniel A. Reed, S. Requena, Joel H. Saltz, Thomas C. Schulthess, Rick L. Stevens, D. Martin Swany, Alexander S. Szalay, William M. Tang, G. Varoquaux, Jean-Pierre Vilotte, Robert W. Wisniewski, Z. Xu, Igor Zacharov
Big data and extreme-scale computing. Int. J. High Perform. Comput. Appl. 32 (4) (2018)
Luis F. R. Taveira, Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Erich Bremer, Joel H. Saltz, George Teodoro
Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance. CoRR (2018)
Quoc Dang Vu, Simon Graham, Minh Nguyen Nhat To, Muhammad Shaban, Talha Qaiser, Navid Alemi Koohbanani, Syed Ali Khurram, Tahsin M. Kurç, Keyvan Farahani, Tianhao Zhao, Rajarsi R. Gupta, Jin Tae Kwak, Nasir M. Rajpoot, Joel H. Saltz
Methods for Segmentation and Classification of Digital Microscopy Tissue Images. CoRR (2018)
Sina Rashidian, Janos G. Hajagos, Richard A. Moffitt, Fusheng Wang, Xinyu Dong, Kayley Abell-Hart, Kimberly Noel, Rajarsi R. Gupta, Mathew Tharakan, Veena Lingam, Joel H. Saltz, Mary M. Saltz
Disease phenotyping using deep learning: A diabetes case study. CoRR (2018)
Tahsin M. Kurç, Joel H. Saltz, Fred W. Prior, Ashish Sharma
Systems Demonstration: Towards a Services Oriented Platform for Combined Radiology-Pathology Image Analysis and Interpretation. AMIA (2018)
Sheetal Pandrekar Mangesh, Xin Chen, Gaurav Gopalkrishna, Avi Srivastava, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
Social Media Based Analysis of Opioid Epidemic Using Reddit. AMIA (2018)
Jeremias M. Gomes, Alba Cristina Magalhaes Alves de Melo, Jun Kong, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™. Concurr. Comput. Pract. Exp. 30 (14) (2018)
Willian Barreiros, George Teodoro, Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz
Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems. CLUSTER (2017)
Naiyun Zhou, Xiaxia Yu, Tianhao Zhao, Si Wen, Fusheng Wang, Wei Zhu, Tahsin M. Kurç, Allen R. Tannenbaum, Joel H. Saltz, Yi Gao
Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis. Medical Imaging: Digital Pathology (2017)
Le Hou, Ayush Agarwal, Dimitris Samaras, Tahsin M. Kurç, Rajarsi R. Gupta, Joel H. Saltz
Unsupervised Histopathology Image Synthesis. CoRR (2017)
Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Joel H. Saltz
ConvNets with Smooth Adaptive Activation Functions for Regression. AISTATS (2017)
Xin Chen, Yu Wang, Xiaxia Yu, Elinor Schoenfeld, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
Large-scale Analysis of Opioid Poisoning Related Hospital Visits in New York State. AMIA (2017)
Joel H. Saltz, Ashish Sharma, Alexis B. Carter, Liron Pantanowitz, Tahsin M. Kurç
20 Years of Digital Pathology - An Overview of the Road Travelled and What is on the Horizon. AMIA (2017)
Furqan Baig, Hoang Vo, Tahsin M. Kurç, Joel H. Saltz, Fusheng Wang
SparkGIS: Resource Aware Efficient In-Memory Spatial Query Processing. SIGSPATIAL/GIS (2017)
Konstantin Dmitriev, Arie E. Kaufman, Ammar A. Javed, Ralph H. Hruban, Elliot K. Fishman, Anne Marie Lennon, Joel H. Saltz
Classification of Pancreatic Cysts in Computed Tomography Images Using a Random Forest and Convolutional Neural Network Ensemble. MICCAI (3) (2017)
George Teodoro, Tahsin M. Kurç, Guilherme Andrade, Jun Kong, Renato Ferreira, Joel H. Saltz
Application performance analysis and efficient execution on systems with multi-core CPUs, GPUs and MICs: a case study with microscopy image analysis. Int. J. High Perform. Comput. Appl. 31 (1) (2017)
Veda Murthy, Le Hou, Dimitris Samaras, Tahsin M. Kurç, Joel H. Saltz
Center-Focusing Multi-task CNN with Injected Features for Classification of Glioma Nuclear Images. WACV (2017)
Le Hou, Vu Nguyen, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Tianhao Zhao, Joel H. Saltz
Sparse Autoencoder for Unsupervised Nucleus Detection and Representation in Histopathology Images. CoRR (2017)
Xin Chen, Yu Wang, Elinor Schoenfeld, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
Spatio-temporal Analysis for New York State SPARCS Data. CRI (2017)
Veronica E. Lynn, Niranjan Balasubramanian, Tahsin M. Kurç, Joel H. Saltz, Rebecca Jacobson
POE: A Pathology Extraction Tool for Finding Attribute-Value Pairs in Glioma Pathology Reports. AMIA (2016)
Erich Bremer, Tahsin M. Kurç, Yi Gao, Joel H. Saltz, Jonas S. Almeida
Safe "cloudification" of large images through picker APIs. AMIA (2016)
Yi Gao, William Liu, Shipra Arjun, Liangjia Zhu, Vadim Ratner, Tahsin M. Kurç, Joel H. Saltz, Allen R. Tannenbaum
Multi-scale learning based segmentation of glands in digital colonrectal pathology images. Medical Imaging: Digital Pathology (2016)
George Teodoro, Tahsin M. Kurç, Luis F. R. Taveira, Alba C. M. A. Melo, Jun Kong, Joel H. Saltz
Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets. CoRR (2016)
Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Joel H. Saltz
Neural Networks with Smooth Adaptive Activation Functions for Regression. CoRR (2016)
Yi Gao, Vadim Ratner, Liangjia Zhu, Tammy Diprima, Tahsin M. Kurç, Allen R. Tannenbaum, Joel H. Saltz
Hierarchical nucleus segmentation in digital pathology images. Medical Imaging: Digital Pathology (2016)
Sarah B. Putney, Andrew White, Janos G. Hajagos, Joel H. Saltz, Jonas S. Almeida, Mary M. Saltz
S2CR3UM: A Solution to the In Silico Relevance, Reliability & Reproducibility Conundrum. AMIA (2016)
Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, James E. Davis, Joel H. Saltz
Patch-Based Convolutional Neural Network for Whole Slide Tissue Image Classification. CVPR (2016)
Veda Murthy, Le Hou, Dimitris Samaras, Tahsin M. Kurç, Joel H. Saltz
Center-Focusing Multi-task CNN with Injected Features for Classification of Glioma Nuclear Images. CoRR (2016)
Naiyun Zhou, Joel H. Saltz, Klaus Mueller
Maps of Human Disease: A Web-Based Framework for the Visualization of Human Disease Comorbidity and Clinical Profile Overlay. Big-O(Q)/DMAH@VLDB (2015)
Mary M. Saltz, Joel H. Saltz, Janos G. Hajagos, Andrew White, Charles Boicey, Jim Murry, Ivan Crnosija, Tahsin M. Kurç, Erich Bremer, Jonas S. Almeida
Integrative Informatics and Predictive Modeling Support for Population Health. AMIA (2015)

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Joel H. Saltz