Warren A. Kibbe

Publication Activity (10 Years)

Years Active: 2001-2022
Publications (10 Years): 6

Top Topics

Single Nucleotide Polymorphisms

Candidate Genes

Integrating Multiple

Top Venues

J. Am. Medical Informatics Assoc.

Nucleic Acids Res.

npj Digit. Medicine

Publications

Gabriel A. Carrillo, Michael Cohen-Wolkowiez, Emily M. D'agostino, Keith Marsolo, Lisa M. Wruck, Laura Johnson, James Topping, Al Richmond, Giselle Corbie, Warren A. Kibbe
Standardizing, harmonizing, and protecting data collection to broaden the impact of COVID-19 research: the rapid acceleration of diagnostics-underserved populations (RADx-UP) initiative. J. Am. Medical Informatics Assoc. 29 (9) (2022)
Jason A. Thomas, Randi E. Foraker, Noa Zamstein, Jon D. Morrow, Philip R. O. Payne, Adam B. Wilcox, Melissa A. Haendel, Christopher G. Chute, Kenneth R. Gersing, Anita Walden, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Hongfang Liu, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Justin Starren, Christine Suver, Chunlei Wu, Davera Gabriel, Stephanie S. Hong, Kristin Kostka, Harold P. Lehmann, Richard A. Moffitt, Michele Morris, Matvey B. Palchuk, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Mark M. Bissell, Marshall Clark, Andrew T. Girvin, Adam M. Lee, Robert T. Miller, Kellie M. Walters, Yooree Chae, Connor Cook, Alexandra Dest, Racquel R. Dietz, Thomas Dillon, Patricia A. Francis, Rafael Fuentes, Alexis Graves, Andrew J. Neumann, Shawn T. O'Neil, Usman Sheikh, Andréa M. Volz, Elizabeth Zampino, Christopher P. Austin, Samuel Bozzette, Mariam Deacy, Nicole Garbarini, Michael G. Kurilla, Sam G. Michael, Joni L. Rutter, Meredith Temple-O'Connor, Katie Rebecca Bradwell, Amin Manna, Nabeel Qureshi, Mary Morrison Saltz, Julie A. McMurry, Carolyn Bramante, Jeremy Richard Harper, Wenndy Hernandez, Farrukh M. Koraishy, Federico Mariona, Saidulu Mattapally, Amit Saha, Satyanarayana Vedula, Yujuan Fu, Nisha Mathews, Ofer Mendelevitch
Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 29 (8) (2022)
Brinnae Bent, Oana M. Enache, Benjamin Goldstein, Warren A. Kibbe, Jessilyn Dunn
Reply: Matters Arising 'Investigating sources of inaccuracy in wearable optical heart rate sensors'. npj Digit. Medicine 4 (2021)
Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Philip R. O. Payne, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Christine Suver, John Wilbanks, Adam B. Wilcox, Andrew E. Williams, Chunlei Wu, Clair Blacketer, Robert L. Bradford, James J. Cimino, Marshall Clark, Evan W. Colmenares, Patricia A. Francis, Davera Gabriel, Alexis Graves, Raju Hemadri, Stephanie S. Hong, George Hripcsak, Dazhi Jiao, Jeffrey G. Klann, Kristin Kostka, Adam M. Lee, Harold P. Lehmann, Lora Lingrey, Robert T. Miller, Michele Morris, Shawn N. Murphy, Karthik Natarajan, Matvey B. Palchuk, Usman Sheikh, Harold Solbrig, Shyam Visweswaran, Anita Walden, Kellie M. Walters, Griffin M. Weber, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin Amor, Andrew T. Girvin, Amin Manna, Nabeel Qureshi, Michael G. Kurilla, Sam G. Michael, Lili M. Portilla, Joni L. Rutter, Christopher P. Austin, Ken R. Gersing
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment. J. Am. Medical Informatics Assoc. 28 (3) (2021)
Brinnae Bent, Benjamin Goldstein, Warren A. Kibbe, Jessilyn Dunn
Investigating sources of inaccuracy in wearable optical heart rate sensors. npj Digit. Medicine 3 (2020)
Juli D. Klemm, Mervi Heiskanen, Jerry Li, David Miller, Christos Patriotis, George Redmond, Miguel Ossandon, Jacek Capala, Leah E. Mechanic, Yantian Zhang, Rao Divi, Tony Dickherber, Warren A. Kibbe
The National Cancer Institute (NCI) Informatics Technology for Cancer Research Program (ITCR). CRI (2017)
Warren A. Kibbe, Cesar Arze, Victor Felix, Elvira Mitraka, Evan Bolton, Gang Fu, Christopher J. Mungall, Janos X. Binder, James Malone, Drashtti Vasant, Helen E. Parkinson, Lynn M. Schriml
Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data. Nucleic Acids Res. 43 (Database-Issue) (2015)
Tsung-Jung Wu, Lynn M. Schriml, Qingrong Chen, Maureen Colbert, Daniel J. Crichton, Richard P. Finney, Ying Hu, Warren A. Kibbe, Heather Kincaid, Daoud M. Meerzaman, Elvira Mitraka, Yang Pan, Krista Smith, Sudhir Srivastava, Sari Ward, Cheng Yan, Raja Mazumder
Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis. Database J. Biol. Databases Curation 2015 (2015)
Siddhartha Basu, Petra Fey, Yogesh Pandit, Robert J. Dodson, Warren A. Kibbe, Rex L. Chisholm
dictyBase 2013: integrating multiple Dictyostelid species. Nucleic Acids Res. 41 (Database-Issue) (2013)
Kai Peng, Wei Xu, Jianyong Zheng, Kegui Huang, Huisong Wang, Jiansong Tong, Zhifeng Lin, Jun Liu, Wenqing Cheng, Dong Fu, Pan Du, Warren A. Kibbe, Simon M. Lin, Tian Xia
The disease and gene annotations (DGA): an annotation resource for human disease. Nucleic Acids Res. 41 (Database-Issue) (2013)
Lynn M. Schriml, Cesar Arze, Suvarna Nadendla, Yu-Wei Wayne Chang, Mark Mazaitis, Victor Felix, Gang Feng, Warren A. Kibbe
Disease Ontology: a backbone for disease semantic integration. Nucleic Acids Res. 40 (Database-Issue) (2012)
Luke V. Rasmussen, David Were, Jeff Lunt, Steve Lee, Carl Christensen, Warren A. Kibbe, Justin Starren
Integrating Research Recruitment into a Clinical Patient Portal. AMIA (2012)
Monique Hinchcliff, Eric M. Just, Sofia Podlusky, John Varga, Rowland W. Chang, Warren A. Kibbe
Text data extraction for a prospective, research-focused data mart: implementation and validation. BMC Medical Informatics Decis. Mak. 12 (2012)
Andrew Gawron, Mark Wimbiscus Yoon, Laura Wimbiscus Yoon, Kristina Verkaik, Meghan Thompson, Abel N. Kho, Warren A. Kibbe, John Pandolfino
GI Diaries©: A model iOS application for the collection of patient reported outcomes in clinical care. AMIA (2012)
Pascale Gaudet, Petra Fey, Siddhartha Basu, Yulia A. Bushmanova, Robert J. Dodson, Kerry A. Sheppard, Eric M. Just, Warren A. Kibbe, Rex L. Chisholm
dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa. Nucleic Acids Res. 39 (Database-Issue) (2011)
Griffin M. Weber, William Barnett, Mike Conlon, David Eichmann, Warren A. Kibbe, Holly J. Falk-Krzesinski, Michael Halaas, Layne Johnson, Eric Meeks, Donald Mitchell, Titus Schleyer, Sarah C. Stallings, Michael Warden, Maninder Kahlon
Direct2Experts: a pilot national network to demonstrate interoperability among research-networking platforms. J. Am. Medical Informatics Assoc. 18 (Supplement) (2011)
Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A. Kibbe, Lifang Hou, Simon M. Lin
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinform. 11 (2010)
Pan Du, Gang Feng, Jared Flatow, Jie Song, Michelle Holko, Warren A. Kibbe, Simon M. Lin
From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations. Bioinform. 25 (12) (2009)
Petra Fey, Pascale Gaudet, Tomaz Curk, Blaz Zupan, Eric M. Just, Siddhartha Basu, Sohel N. Merchant, Yulia A. Bushmanova, Gad Shaulsky, Warren A. Kibbe, Rex L. Chisholm
bioinformatics resource update. Nucleic Acids Res. 37 (Database-Issue) (2009)
Chia-Ju Lee, Dong Fu, Pan Du, Hongmei Jiang, Simon M. Lin, Warren A. Kibbe
A divide-and-conquer strategy to solve the out-of-memory problem of processing thousands of Affymetrix microarrays. Int. J. Comput. Biol. Drug Des. 1 (4) (2008)
Pan Du, Warren A. Kibbe, Simon M. Lin
: a pipeline for processing Illumina microarray. Bioinform. 24 (13) (2008)
Pan Du, Simon M. Lin, Warren A. Kibbe, Haihui Wang
Application of Wavelet Transform to the MS-based Proteomics Data Preprocessing. BIBE (2007)
Warren A. Kibbe
OligoCalc: an online oligonucleotide properties calculator. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Bradley I. Arshinoff, Garret Suen, Eric M. Just, Sohel M. Merchant, Warren A. Kibbe, Rex L. Chisholm, Roy D. Welch
Xanthusbase: adapting wikipedia principles to a model organism database. Nucleic Acids Res. 35 (Database-Issue) (2007)
Pan Du, Warren A. Kibbe, Simon M. Lin
Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching. Bioinform. 22 (17) (2006)
Rex L. Chisholm, Pascale Gaudet, Eric M. Just, Karen E. Pilcher, Petra Fey, Sohel N. Merchant, Warren A. Kibbe
. Nucleic Acids Res. 34 (Database-Issue) (2006)
Lisa Kreppel, Petra Fey, Pascale Gaudet, Eric M. Just, Warren A. Kibbe, Rex L. Chisholm, Alan R. Kimmel
dictyBase: a new Dictyostelium discoideum genome database. Nucleic Acids Res. 32 (Database-Issue) (2004)
K. Gwaltney, Christopher G. Chute, Douglas Hageman, Warren A. Kibbe, Kathleen A. McCormick, Dianne M. Reeves, Lawrence W. Wright
An assessment of cancer clinical trials vocabulary and IT infrastructure in the U.S. AMIA (2001)