Blaz Zupan

ORCID

Publication Activity (10 Years)

Years Active: 1995-2024
Publications (10 Years): 25

Top Venues

CoRR

Bioinform.

BMC Bioinform.

Publications

Pavlin G. Policar, Martin Strazar, Blaz Zupan
Library for t-SNE Dimensionality Reduction and Embedding. J. Stat. Softw. 109 (3) (2024)
Pavlin G. Policar, Blaz Zupan
VERA: Generating Visual Explanations of Two-Dimensional Embeddings via Region Annotation. CoRR (2024)
Pavlin G. Policar, Blaz Zupan
Visualizing High-Dimensional Temporal Data Using Direction-Aware t-SNE. CoRR (2024)
Pavlin G. Policar, Martin Strazar, Blaz Zupan
Embedding to reference t-SNE space addresses batch effects in single-cell classification. Mach. Learn. 112 (2) (2023)
Pavlin G. Policar, Blaz Zupan
Refining Temporal Visualizations Using the Directional Coherence Loss. DS (2023)
Martin Spendl, Jaka Kokosar, Ela Praznik, Luka Ausec, Blaz Zupan
Ranking of Survival-Related Gene Sets Through Integration of Single-Sample Gene Set Enrichment and Survival Analysis. AIME (2023)
Pavlin G. Policar, Dalibor Stanimirovic, Blaz Zupan
Nation-Wide ePrescription Data Reveals Landscape of Physicians and Their Drug Prescribing Patterns in Slovenia. AIME (2023)
Jaka Kokosar, Martin Spendl, Blaz Zupan
Gene Interactions in Survival Data Analysis: A Data-Driven Approach Using Restricted Mean Survival Time and Literature Mining. DS (2023)
Primoz Godec, Blaz Zupan, Vesna Tanko, Martin Strazar
Efficient Matching of Single Cells and Cell Types. ICHI (2022)
Primoz Godec, Nikola Ðukic, Ajda Pretnar, Vesna Tanko, Lan Zagar, Blaz Zupan
Explainable Point-Based Document Visualizations. CoRR (2021)
Tomaz Hocevar, Blaz Zupan
Conformal prediction and its integration within visual analytics toolbox. COPA (2021)
Janez Demsar, Blaz Zupan
Hands-on training about overfitting. PLoS Comput. Biol. 17 (3) (2021)
Karsten Klein, Georgeta Elisabeta Marai, Kay Katja Nieselt, Blaz Zupan
Visualization of Biological Data - From Analysis to Communication (Dagstuhl Seminar 21401). Dagstuhl Reports 11 (9) (2021)
Tomaz Hocevar, Blaz Zupan, Jonna C. Stålring
Conformal Prediction with Orange. J. Stat. Softw. 98 (1) (2021)
Veljko Pejovic, Ivan Majhen, Miha Janez, Blaz Zupan
RICERCANDO: Data mining toolkit for mobile broadband measurements. Comput. Networks 177 (2020)
Pavlin G. Policar, Martin Strazar, Blaz Zupan
Embedding to Reference t-SNE Space Addresses Batch Effects in Single-Cell Classification. DS (2019)
Veljko Pejovic, Ivan Majhen, Miha Janez, Blaz Zupan
RICERCANDO: Data Mining Toolkit for Mobile Broadband Measurements. CoRR (2019)
Martin Strazar, Lan Zagar, Jaka Kokosar, Vesna Tanko, Ales Erjavec, Pavlin G. Policar, Anze Staric, Janez Demsar, Gad Shaulsky, Vilas Menon, Andrew Lemire, Anup Parikh, Blaz Zupan
scOrange - a tool for hands-on training of concepts from single-cell data analytics. Bioinform. 35 (14) (2019)
Marinka Zitnik, Blaz Zupan
NIMFA: A Python Library for Nonnegative Matrix Factorization. CoRR (2018)
Andrej Copar, Marinka Zitnik, Blaz Zupan
Scalable non-negative matrix tri-factorization. BioData Min. 10 (1) (2017)
Miha Stajdohar, Rafael D. Rosengarten, Janez Kokosar, Luka Jeran, Domen Blenkus, Gad Shaulsky, Blaz Zupan
and beyond. BMC Bioinform. 18 (1) (2017)
Marinka Zitnik, Blaz Zupan
Jumping across biomedical contexts using compressive data fusion. CoRR (2017)
Marinka Zitnik, Blaz Zupan
Collective Pairwise Classification for Multi-Way Analysis of Disease and Drug Data. PSB (2016)
Martin Strazar, Marinka Zitnik, Blaz Zupan, Jernej Ule, Tomaz Curk
Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins. Bioinform. 32 (10) (2016)
Marinka Zitnik, Blaz Zupan
Jumping across biomedical contexts using compressive data fusion. Bioinform. 32 (12) (2016)
Sanja Brdar, Vladimir S. Crnojevic, Blaz Zupan
Integrative Clustering by Nonnegative Matrix Factorization Can Reveal Coherent Functional Groups From Gene Profile Data. IEEE J. Biomed. Health Informatics 19 (2) (2015)
Anze Staric, Janez Demsar, Blaz Zupan
Concurrent software architectures for exploratory data analysis. WIREs Data Mining Knowl. Discov. 5 (4) (2015)
Slavko Zitnik, Marinka Zitnik, Blaz Zupan, Marko Bajec
Sieve-based relation extraction of gene regulatory networks from biological literature. BMC Bioinform. 16 (S16) (2015)
Marinka Zitnik, Blaz Zupan
Data Fusion by Matrix Factorization. IEEE Trans. Pattern Anal. Mach. Intell. 37 (1) (2015)
Marinka Zitnik, Blaz Zupan
Gene network inference by fusing data from diverse distributions. Bioinform. 31 (12) (2015)
Marinka Zitnik, Edward A. Nam, Christopher Dinh, Adam Kuspa, Gad Shaulsky, Blaz Zupan
Gene Prioritization by Compressive Data Fusion and Chaining. PLoS Comput. Biol. 11 (10) (2015)
Marinka Zitnik, Blaz Zupan
Data Imputation in Epistatic MAPs by Network-Guided Matrix Completion. J. Comput. Biol. 22 (6) (2015)
Marinka Zitnik, Blaz Zupan
Matrix Factorization-Based Data Fusion for Gene Function Prediction in Baker's Yeast and Slime Mold. Pacific Symposium on Biocomputing (2014)
Marinka Zitnik, Blaz Zupan
Imputation of Quantitative Genetic Interactions in Epistatic MAPs by Interaction Propagation Matrix Completion. RECOMB (2014)
Davor Sluga, Tomaz Curk, Blaz Zupan, Uros Lotric
Heterogeneous computing architecture for fast detection of SNP-SNP interactions. BMC Bioinform. 15 (2014)
Marinka Zitnik, Blaz Zupan
Gene network inference by probabilistic scoring of relationships from a factorized model of interactions. Bioinform. 30 (12) (2014)
Marko Toplak, Rok Mocnik, Matija Polajnar, Zoran Bosnic, Lars Carlsson, Catrin Hasselgren Arnby, Janez Demsar, Scott Boyer, Blaz Zupan, Jonna C. Stålring
Assessment of Machine Learning Reliability Methods for Quantifying the Applicability Domain of QSAR Regression Models. J. Chem. Inf. Model. 54 (2) (2014)
Janez Demsar, Tomaz Curk, Ales Erjavec, Crtomir Gorup, Tomaz Hocevar, Mitar Milutinovic, Martin Mozina, Matija Polajnar, Marko Toplak, Anze Staric, Miha Stajdohar, Lan Umek, Lan Zagar, Jure Zbontar, Marinka Zitnik, Blaz Zupan
Orange: data mining toolbox in python. J. Mach. Learn. Res. 14 (1) (2013)
Slavko Zitnik, Marinka Zitnik, Blaz Zupan, Marko Bajec
Extracting Gene Regulation Networks Using Linear-Chain Conditional Random Fields and Rules. BioNLP@ACL (Shared Task) (2013)
Marinka Zitnik, Blaz Zupan
Data Fusion by Matrix Factorization. CoRR (2013)
Marko Bohanec, Martin Znidarsic, Vladislav Rajkovic, Ivan Bratko, Blaz Zupan
DEX Methodology: Three Decades of Qualitative Multi-Attribute Modeling. Informatica (Slovenia) 37 (1) (2013)
Janez Demsar, Blaz Zupan
Orange: Data Mining Fruitful and Fun - A Historical Perspective. Informatica (Slovenia) 37 (1) (2013)
Francesca Mulas, Elisa Del Fabbro, Blaz Zupan, Riccardo Bellazzi
Interest Propagation for Knowledge Extraction and Representation. EFMI-STC (2013)
Marinka Zitnik, Blaz Zupan
NIMFA: A Python Library for Nonnegative Matrix Factorization. J. Mach. Learn. Res. 13 (2012)
Jure Zbontar, Marinka Zitnik, Miha Zidar, Gregor Majcen, Matic Potocnik, Blaz Zupan
Team ULjubljana's Solution to the JRS 2012 Data Mining Competition. RSCTC (2012)
Lan Umek, Blaz Zupan
Subgroup discovery in data sets with multi-dimensional responses. Intell. Data Anal. 15 (4) (2011)
Angelo Nuzzo, Riccardo Beretta, Francesca Mulas, Valerie Roobrouck, Catherine M. Verfaillie, Blaz Zupan, Riccardo Bellazzi
A Data Mining Library for miRNA Annotation and Analysis. AIME (2011)
Lan Zagar, Francesca Mulas, Riccardo Bellazzi, Blaz Zupan
Ranking and 1-Dimensional Projection of Cell Development Transcription Profiles. AIME (2011)
Lan Zagar, Francesca Mulas, Silvia Garagna, Maurizio Zuccotti, Riccardo Bellazzi, Blaz Zupan
Stage prediction of embryonic stem cell differentiation from genome-wide expression data. Bioinform. 27 (18) (2011)
Tomaz Curk, Gregor Rot, Blaz Zupan
SNPsyn: detection and exploration of SNP-SNP interactions. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Marko Toplak, Tomaz Curk, Blaz Zupan
Similarity of Transcription Profiles for Genes in Gene Sets. ICANNGA (2) (2011)
Anup Parikh, Eryong Huang, Christopher Dinh, Blaz Zupan, Adam Kuspa, Devika Subramanian, Gad Shaulsky
PKA pathway revealed by Bayesian analysis of expression data. BMC Bioinform. 11 (2010)
Miha Stajdohar, Minca Mramor, Blaz Zupan, Janez Demsar
FragViz: visualization of fragmented networks. BMC Bioinform. 11 (2010)
Minca Mramor, Marko Toplak, Gregor Leban, Tomaz Curk, Janez Demsar, Blaz Zupan
On utility of gene set signatures in gene expression-based cancer class prediction. MLSB (2010)
Lan Umek, Petra Kaferle, Mojca Mattiazzi, Ales Erjavec, Crtomir Gorup, Tomaz Curk, Uros Petrovic, Blaz Zupan
A Subgroup Discovery Approach for Relating Chemical Structure and Phenotype Data in Chemical Genomics. MLSB (2010)
Angelo Nuzzo, Francesca Mulas, Matteo Gabetta, Eloisa Arbustini, Blaz Zupan, Cristiana Larizza, Riccardo Bellazzi
Text Mining approaches for Automated Literature Knowledge Extraction and Representation. MedInfo (2010)
Lan Umek, Blaz Zupan, Marko Toplak, Annie Morin, Jean-Hugues Chauchat, Gregor Makovec, Dragica Smrke
Subgroup Discovery in Data Sets with Multi-dimensional Responses: A Method and a Case Study in Traumatology. AIME (2009)
Gregor Rot, Anup Parikh, Tomaz Curk, Adam Kuspa, Gad Shaulsky, Blaz Zupan
gene expression database with an explorative data analysis web-based interface. BMC Bioinform. 10 (2009)
Petra Fey, Pascale Gaudet, Tomaz Curk, Blaz Zupan, Eric M. Just, Siddhartha Basu, Sohel N. Merchant, Yulia A. Bushmanova, Gad Shaulsky, Warren A. Kibbe, Rex L. Chisholm
bioinformatics resource update. Nucleic Acids Res. 37 (Database-Issue) (2009)
Sasa Petrovic, Bojana Dalbelo Basic, Annie Morin, Blaz Zupan, Jean-Hugues Chauchat
Textual features for corpus visualization using correspondence analysis. Intell. Data Anal. 13 (5) (2009)
Francesca Mulas, Tomaz Curk, Riccardo Bellazzi, Blaz Zupan
On Quality of Different Annotation Sources for Gene Expression Analysis. AIME (2009)
Martin Znidarsic, Marko Bohanec, Blaz Zupan
Modelling impacts of cropping systems: Demands and solutions for DEX methodology. Eur. J. Oper. Res. 189 (3) (2008)
Riccardo Bellazzi, Blaz Zupan
Predictive data mining in clinical medicine: Current issues and guidelines. Int. J. Medical Informatics 77 (2) (2008)
Jurica Zucko, N. Skunca, Tomaz Curk, Blaz Zupan, Paul F. Long, John Cullum, R. H. Kessin, Daslav Hranueli
. Bioinform. 23 (19) (2007)
Janez Demsar, Gregor Leban, Blaz Zupan
FreeViz - An intelligent multivariate visualization approach to explorative analysis of biomedical data. J. Biomed. Informatics 40 (6) (2007)
Riccardo Bellazzi, Blaz Zupan
Towards knowledge-based gene expression data mining. J. Biomed. Informatics 40 (6) (2007)
Minca Mramor, Gregor Leban, Janez Demsar, Blaz Zupan
Visualization-based cancer microarray data classification analysis. Bioinform. 23 (16) (2007)
Gregor Leban, Blaz Zupan, Gaj Vidmar, Ivan Bratko
VizRank: Data Visualization Guided by Machine Learning. Data Min. Knowl. Discov. 13 (2) (2006)
Andrej Bratko, Bogdan Filipic, Blaz Zupan
Towards Practical PPM Spam Filtering: Experiments for the TREC 2006 Spam Track. TREC (2006)
Andrej Bratko, Gordon V. Cormack, Bogdan Filipic, Thomas R. Lynam, Blaz Zupan
Spam Filtering Using Statistical Data Compression Models. J. Mach. Learn. Res. 7 (2006)
Blaz Zupan, John H. Holmes, Riccardo Bellazzi
Knowledge-based data analysis and interpretation. Artif. Intell. Medicine 37 (3) (2006)
Martin Znidarsic, Marko Bohanec, Blaz Zupan
proDEX - A DSS tool for environmental decision-making. Environ. Model. Softw. 21 (10) (2006)
Gregor Leban, Ivan Bratko, Uros Petrovic, Tomaz Curk, Blaz Zupan
VizRank: finding informative data projections in functional genomics by machine learning. Bioinform. 21 (3) (2005)
Aleks Jakulin, Martin Mozina, Janez Demsar, Ivan Bratko, Blaz Zupan
Nomograms for visualizing support vector machines. KDD (2005)
Gregor Leban, Minca Mramor, Ivan Bratko, Blaz Zupan
Simple and effective visual models for gene expression cancer diagnostics. KDD (2005)
Minca Mramor, Gregor Leban, Janez Demsar, Blaz Zupan
Conquering the Curse of Dimensionality in Gene Expression Cancer Diagnosis: Tough Problem, Simple Models. AIME (2005)
Tomaz Curk, Janez Demsar, Qikai Xu, Gregor Leban, Uros Petrovic, Ivan Bratko, Gad Shaulsky, Blaz Zupan
Microarray data mining with visual programming. Bioinform. 21 (3) (2005)
Lucia Sacchi, Riccardo Bellazzi, Cristiana Larizza, Paolo Magni, Tomaz Curk, Uros Petrovic, Blaz Zupan
TA-clustering: Cluster analysis of gene expression profiles through Temporal Abstractions. Int. J. Medical Informatics 74 (7-8) (2005)
Peter Juvan, Janez Demsar, Gad Shaulsky, Blaz Zupan
GenePath: from mutations to genetic networks and back. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Martin Mozina, Janez Demsar, Michael W. Kattan, Blaz Zupan
Nomograms for Visualization of Naive Bayesian Classifier. PKDD (2004)
Janez Demsar, Blaz Zupan, Gregor Leban, Tomaz Curk
Orange: From Experimental Machine Learning to Interactive Data Mining. PKDD (2004)
Marko Bohanec, Blaz Zupan
A function-decomposition method for development of hierarchical multi-attribute decision models. Decis. Support Syst. 36 (3) (2004)
Lucia Sacchi, Riccardo Bellazzi, Cristiana Larizza, Paolo Magni, Tomaz Curk, Uros Petrovic, Blaz Zupan
Clustering gene expression data with Temporal Abstractions. MedInfo (2004)
Blaz Zupan, Ivan Bratko, Janez Demsar, Peter Juvan, Tomaz Curk, Urban Borstnik, J. Robert Beck, John A. Halter, Adam Kuspa, Gad Shaulsky
GenePath: a system for inference of genetic networks and proposal of genetic experiments. Artif. Intell. Medicine 29 (1-2) (2003)
Aleks Jakulin, Ivan Bratko, Dragica Smrke, Janez Demsar, Blaz Zupan
Attribute Interactions in Medical Data Analysis. AIME (2003)
Blaz Zupan, Janez Demsar, Ivan Bratko, Peter Juvan, John A. Halter, Adam Kuspa, Gad Shaulsky
GenePath: a system for automated construction of genetic networks from mutant data. Bioinform. 19 (3) (2003)
Marjan Krisper, Blaz Zupan
Construction and application of hierarchical socioeconomic decision models. Informatica (Slovenia) 26 (1) (2002)
Kenji Hira, Noriaki Aoki, Akitoshi Hayashi, Janez Demsar, Blaz Zupan, Kim Dunn, William Jack Schull, Tsuguya Fukui
Prognostic Model for Terminally Ill Cancer Patients on Laboratory Data. AMIA (2002)
Blaz Zupan, Ivan Bratko, Janez Demsar, J. Robert Beck, Adam Kuspa, Gad Shaulsky
Abductive Inference of Genetic Networks. AIME (2001)
Riccardo Bellazzi, Blaz Zupan
A Sixth International Workshop on Intelligent Data Analysis in Medicine and Pharmacology (IDAMAP-2001). MedInfo (2001)
Blaz Zupan, Ales Porenta, Gaj Vidmar, Noriaki Aoki, Ivan Bratko, J. Robert Beck
Decisions at Hand: A Decision Support System on Handhelds. MedInfo (2001)
Janez Demsar, Blaz Zupan, Noriaki Aoki, Matthew J. Wall, Thomas H. Granchi, J. Robert Beck
Feature mining and predictive model construction from severe trauma patient's data. Int. J. Medical Informatics 63 (1-2) (2001)
Peter Juvan, Blaz Zupan, Janez Demsar, Ivan Bratko, John A. Halter, Adam Kuspa, Gad Shaulsky
Web-Enabled Knowledge-Based Analysis of Genetic Data. ISMDA (2001)
Blaz Zupan, Ivan Bratko, Marko Bohanec, Janez Demsar
Function Decomposition in Machine Learning. Machine Learning and Its Applications (2001)
Janez Demsar, Blaz Zupan, Ivan Bratko, Adam Kuspa, John A. Halter, Robert J. Beck, Gad Shaulsky
GenePath: A Computer Program for Genetic Pathway Discovery from Mutant Data. MedInfo (2001)
Marko Bohanec, Blaz Zupan, Vladislav Rajkovic
Applications of qualitative multi-attribute decision models in health care. Int. J. Medical Informatics 58 (2000)
Blaz Zupan, Ivan Bratko, Marko Bohanec, Janez Demsar
Induction of Concept Hierarchies from Noisy Data. ICML (2000)
Blaz Zupan, Janez Demsar, Michael W. Kattan, J. Robert Beck, Ivan Bratko
Machine learning for survival analysis: a case study on recurrence of prostate cancer. Artif. Intell. Medicine 20 (1) (2000)
Janez Demsar, Blaz Zupan, Michael W. Kattan, J. Robert Beck, Ivan Bratko
Naive Bayesian-Based Nomogram for Prediction of Prostate Cancer Recurrence. MIE (1999)
Blaz Zupan, Marko Bohanec, Janez Demsar, Ivan Bratko
Learning by Discovering Concept Hierarchies. Artif. Intell. 109 (1-2) (1999)

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Publication Activity (10 Years)

Top Topics

Top Venues

Blaz Zupan