Pushpak Pati

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 34

Top Topics

Multiple Instance

Graph Representations

Image Classification

Weakly Supervised

Top Venues

Medical Image Anal.

Medical Imaging: Digital Pathology

Publications

M. Emre Sahin, Benjamin C. B. Symons, Pushpak Pati, Fayyaz Minhas, Declan Millar, Maria Gabrani, Jan Lukas Robertus, Stefano Mensa
Efficient Parameter Optimisation for Quantum Kernel Alignment: A Sub-sampling Approach in Variational Training. CoRR (2024)
Kevin Thandiackal, Luigi Piccinelli, Rajarsi Gupta, Pushpak Pati, Orcun Goksel
Multi-Scale Feature Alignment for Continual Learning of Unlabeled Domains. IEEE Trans. Medical Imaging 43 (7) (2024)
Boqi Chen, Kevin Thandiackal, Pushpak Pati, Orcun Goksel
Generative appearance replay for continual unsupervised domain adaptation. CoRR (2023)
Kevin Thandiackal, Luigi Piccinelli, Pushpak Pati, Orcun Goksel
Multi-scale Feature Alignment for Continual Learning of Unlabeled Domains. CoRR (2023)
Pushpak Pati, Guillaume Jaume, Zeineb Ayadi, Kevin Thandiackal, Behzad Bozorgtabar, Maria Gabrani, Orcun Goksel
Weakly Supervised Joint Whole-Slide Segmentation and Classification in Prostate Cancer. CoRR (2023)
Saarthak Kapse, Pushpak Pati, Srijan Das, Jingwei Zhang, Chao Chen, Maria Vakalopoulou, Joel H. Saltz, Dimitris Samaras, Rajarsi R. Gupta, Prateek Prasanna
SI-MIL: Taming Deep MIL for Self-Interpretability in Gigapixel Histopathology. CoRR (2023)
Federico Gossi, Pushpak Pati, Panagiotis Chouvardas, Adriano Luca Martinelli, Marianna Kruithof-de Julio, Maria Anna Rapsomaniki
Matching single cells across modalities with contrastive learning and optimal transport. Briefings Bioinform. 24 (3) (2023)
Boqi Chen, Kevin Thandiackal, Pushpak Pati, Orcun Goksel
Generative appearance replay for continual unsupervised domain adaptation. Medical Image Anal. 89 (2023)
Pushpak Pati, Guillaume Jaume, Zeineb Ayadi, Kevin Thandiackal, Behzad Bozorgtabar, Maria Gabrani, Orcun Goksel
Weakly supervised joint whole-slide segmentation and classification in prostate cancer. Medical Image Anal. 89 (2023)
Kevin Thandiackal, Boqi Chen, Pushpak Pati, Guillaume Jaume, Drew F. K. Williamson, Maria Gabrani, Orcun Goksel
Differentiable Zooming for Multiple Instance Learning on Whole-Slide Images. ECCV (21) (2022)
Nadia Brancati, Anna Maria Anniciello, Pushpak Pati, Daniel Riccio, Giosuè Scognamiglio, Guillaume Jaume, Giuseppe De Pietro, Maurizio Di Bonito, Antonio Foncubierta, Gerardo Botti, Maria Gabrani, Florinda Feroce, Maria Frucci
BRACS: A Dataset for BReAst Carcinoma Subtyping in H&E Histology Images. Database J. Biol. Databases Curation 2022 (2022) (2022)
Kevin Thandiackal, Boqi Chen, Pushpak Pati, Guillaume Jaume, Drew F. K. Williamson, Maria Gabrani, Orcun Goksel
Differentiable Zooming for Multiple Instance Learning on Whole-Slide Images. CoRR (2022)
Pushpak Pati, Guillaume Jaume, Antonio Foncubierta-Rodríguez, Florinda Feroce, Anna Maria Anniciello, Giosue Scognamiglio, Nadia Brancati, Maryse Fiche, Estelle Dubruc, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Jean-Philippe Thiran, Maria Frucci, Orcun Goksel, Maria Gabrani
Hierarchical graph representations in digital pathology. Medical Image Anal. 75 (2022)
Pushpak Pati, Guillaume Jaume, Antonio Foncubierta, Florinda Feroce, Anna Maria Anniciello, Giosuè Scognamiglio, Nadia Brancati, Maryse Fiche, Estelle Dubruc, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Jean-Philippe Thiran, Maria Frucci, Orcun Goksel, Maria Gabrani
Hierarchical Cell-to-Tissue Graph Representations for Breast Cancer Subtyping in Digital Pathology. CoRR (2021)
Pushpak Pati, Antonio Foncubierta-Rodríguez, Orcun Goksel, Maria Gabrani
Reducing annotation effort in digital pathology: A Co-Representation learning framework for classification tasks. Medical Image Anal. 67 (2021)
Guillaume Jaume, Pushpak Pati, Valentin Anklin, Antonio Foncubierta, Maria Gabrani
HistoCartography: A Toolkit for Graph Analytics in Digital Pathology. CoRR (2021)
Valentin Anklin, Pushpak Pati, Guillaume Jaume, Behzad Bozorgtabar, Antonio Foncubierta-Rodríguez, Jean-Philippe Thiran, Mathilde Sibony, Maria Gabrani, Orcun Goksel
Learning Whole-Slide Segmentation from Inexact and Incomplete Labels using Tissue Graphs. CoRR (2021)
Antonio Foncubierta-Rodríguez, Pushpak Pati, Guillaume Jaume, Maria Gabrani
Histocartography: a pipeline for histology image analysis. AMIA (2021)
Guillaume Jaume, Pushpak Pati, Behzad Bozorgtabar, Antonio Foncubierta, Anna Maria Anniciello, Florinda Feroce, Tilman Rau, Jean-Philippe Thiran, Maria Gabrani, Orcun Goksel
Quantifying Explainers of Graph Neural Networks in Computational Pathology. CVPR (2021)
Valentin Anklin, Pushpak Pati, Guillaume Jaume, Behzad Bozorgtabar, Antonio Foncubierta-Rodríguez, Jean-Philippe Thiran, Mathilde Sibony, Maria Gabrani, Orcun Goksel
Learning Whole-Slide Segmentation from Inexact and Incomplete Labels Using Tissue Graphs. MICCAI (2) (2021)
Guillaume Jaume, Pushpak Pati, Valentin Anklin, Antonio Foncubierta, Maria Gabrani
HistoCartography: A Toolkit for Graph Analytics in Digital Pathology. COMPAY@MICCAI (2021)
Nadia Brancati, Anna Maria Anniciello, Pushpak Pati, Daniel Riccio, Giosuè Scognamiglio, Guillaume Jaume, Giuseppe De Pietro, Maurizio Di Bonito, Antonio Foncubierta, Gerardo Botti, Maria Gabrani, Florinda Feroce, Maria Frucci
BRACS: A Dataset for BReAst Carcinoma Subtyping in H&E Histology Images. CoRR (2021)
Guillaume Jaume, Pushpak Pati, Behzad Bozorgtabar, Antonio Foncubierta-Rodríguez, Florinda Feroce, Anna Maria Anniciello, Tilman Rau, Jean-Philippe Thiran, Maria Gabrani, Orcun Goksel
Quantifying Explainers of Graph Neural Networks in Computational Pathology. CoRR (2020)
Ting-An Yen, Hung-Chun Hsu, Pushpak Pati, Maria Gabrani, Antonio Foncubierta-Rodríguez, Pau-Choo Chung
NINEPINS: Nuclei Instance Segmentation with Point Annotations. CoRR (2020)
Pushpak Pati, Guillaume Jaume, Lauren Alisha Fernandes, Antonio Foncubierta, Florinda Feroce, Anna Maria Anniciello, Giosue Scognamiglio, Nadia Brancati, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Orcun Goksel, Jean-Philippe Thiran, Maria Frucci, Maria Gabrani
HACT-Net: A Hierarchical Cell-to-Tissue Graph Neural Network for Histopathological Image Classification. CoRR (2020)
Guillaume Jaume, Pushpak Pati, Antonio Foncubierta-Rodríguez, Florinda Feroce, Giosue Scognamiglio, Anna Maria Anniciello, Jean-Philippe Thiran, Orcun Goksel, Maria Gabrani
Towards Explainable Graph Representations in Digital Pathology. CoRR (2020)
Pushpak Pati, Antonio Foncubierta-Rodríguez, Orçun Göksel, Maria Gabrani
Mitosis Detection Under Limited Annotation: A Joint Learning Approach. CoRR (2020)
Pushpak Pati, Guillaume Jaume, Lauren Alisha Fernandes, Antonio Foncubierta-Rodríguez, Florinda Feroce, Anna Maria Anniciello, Giosue Scognamiglio, Nadia Brancati, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Orcun Goksel, Jean-Philippe Thiran, Maria Frucci, Maria Gabrani
HACT-Net: A Hierarchical Cell-to-Tissue Graph Neural Network for Histopathological Image Classification. UNSURE/GRAIL@MICCAI (2020)
Pushpak Pati, Antonio Foncubierta-Rodríguez, Orçun Göksel, Maria Gabrani
Mitosis Detection Under Limited Annotation: A Joint Learning Approach. ISBI (2020)
Pushpak Pati, Raúl Catena, Orcun Goksel, Maria Gabrani
A deep learning framework for context-aware mitotic activity estimation in whole slide images. Medical Imaging: Digital Pathology (2019)
Nuri Murat Arar, Pushpak Pati, Aditya Kashyap, Anna Fomitcheva Khartchenko, Orcun Goksel, Govind V. Kaigala, Maria Gabrani
High-Quality Immunohistochemical Stains Through Computational Assay Parameter Optimization. IEEE Trans. Biomed. Eng. 66 (10) (2019)
Pushpak Pati, Sonali Andani, Matthew Pediaditis, Matheus Palhares Viana, Jan Hendrik Rüschoff, Peter Wild, Maria Gabrani
Deep positive-unlabeled learning for region of interest localization in breast tissue images. Medical Imaging: Digital Pathology (2018)
Milos Stanisavljevic, Andreea Anghel, Nikolaos Papandreou, Sonali Andani, Pushpak Pati, Jan Hendrik Rüschoff, Peter Wild, Maria Gabrani, Haralampos Pozidis
A Fast and Scalable Pipeline for Stain Normalization of Whole-Slide Images in Histopathology. ECCV Workshops (6) (2018)
Nuri Murat Arar, Pushpak Pati, Aditya Kashyap, Anna Fomitcheva Khartchenko, Orcun Goksel, Govind V. Kaigala, Maria Gabrani
Computational Immunohistochemistry: Recipes for Standardization of Immunostaining. MICCAI (2) (2017)