Alba Cristina Magalhaes Alves de Melo

Publication Activity (10 Years)

Years Active: 1997-2024
Publications (10 Years): 21

Top Topics

Multiple Sequence Alignment

Parallel Computation

Top Venues

Concurr. Comput. Pract. Exp.

IPDPS Workshops

Publications

Alba Cristina Magalhaes Alves de Melo, Ananth Kalyanaraman
HiCOMB 2024 Preface and Committees. IPDPS (Workshops) (2024)
Leonardo Rebouças de Carvalho, Alba Cristina Magalhaes Alves de Melo, Aletéia P. F. Araújo
AFMC: An alignment framework for multiple computing services and providers. Concurr. Comput. Pract. Exp. 35 (18) (2023)
Marco Antonio C. de Figueiredo, Edans Flavius de Oliveira Sandes, Genaína Nunes Rodrigues, George Luiz Medeiros Teodoro, Alba Cristina Magalhaes Alves de Melo
MASA-OpenCL: Parallel pruned comparison of long DNA sequences with OpenCL. Concurr. Comput. Pract. Exp. 31 (11) (2019)
Alba Cristina Magalhaes Alves de Melo, Ananth Kalyanaraman
Introduction to HiCOMB 2019. IPDPS Workshops (2019)
Alba Cristina Magalhaes Alves de Melo
APDCM 2019 Keynote Talk. IPDPS Workshops (2019)
Edans Flavius de Oliveira Sandes, George Luiz Medeiros Teodoro, Maria Emília M. T. Walter, Xavier Martorell, Eduard Ayguadé, Alba Cristina Magalhaes Alves de Melo
Formalization of Block Pruning: Reducing the Number of Cells Computed in Exact Biological Sequence Comparison Algorithms. Comput. J. 61 (5) (2018)
Jesús Pérez Serrano, Edans F. de O. Sandes, Alba Cristina Magalhaes Alves de Melo, Manuel Ujaldón
DNA sequences alignment in multi-GPUs: acceleration and energy payoff. BMC Bioinform. (14) (2018)
Daniel Sundfeld, Caina Razzolini, George Teodoro, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo
PA-Star: A disk-assisted parallel A-Star strategy with locality-sensitive hash for multiple sequence alignment. J. Parallel Distributed Comput. 112 (2018)
Jeremias M. Gomes, Alba Cristina Magalhaes Alves de Melo, Jun Kong, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™. Concurr. Comput. Pract. Exp. 30 (14) (2018)
Daniel Sundfeld, Jakob Hull Havgaard, Jan Gorodkin, Alba Cristina Magalhaes Alves de Melo
CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment. PDP (2017)
Jesús Pérez Serrano, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Manuel Ujaldón
Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis. IWBBIO (2) (2017)
Alessandro Ferreira Leite, Vander Alves, Genaína Nunes Rodrigues, Claude Tadonki, Christine Eisenbeis, Alba Cristina Magalhaes Alves de Melo
Dohko: an autonomic system for provision, configuration, and management of inter-cloud environments based on a software product line engineering method. Clust. Comput. 20 (3) (2017)
Alessandro Ferreira Leite, Vander Alves, Genaína Nunes Rodrigues, Claude Tadonki, Christine Eisenbeis, Alba Cristina Magalhaes Alves de Melo
Autonomic Provisioning, Configuration, and Management of Inter-cloud Environments Based on a Software Product Line Engineering Method. ICCAC (2016)
Edans Flavius de Oliveira Sandes, Guillermo Miranda, Xavier Martorell, Eduard Ayguadé, George Teodoro, Alba Cristina Magalhaes Alves de Melo
MASA: A Multiplatform Architecture for Sequence Aligners with Block Pruning. ACM Trans. Parallel Comput. 2 (4) (2016)
Daniel Sundfeld, Jakob Hull Havgaard, Alba Cristina Magalhaes Alves de Melo, Jan Gorodkin
Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment. Bioinform. 32 (8) (2016)
Edans Flavius de Oliveira Sandes, Guillermo Miranda, Xavier Martorell, Eduard Ayguadé, George Teodoro, Alba Cristina Magalhaes Alves de Melo
CUDAlign 4.0: Incremental Speculative Traceback for Exact Chromosome-Wide Alignment in GPU Clusters. IEEE Trans. Parallel Distributed Syst. 27 (10) (2016)
Edans Flavius de Oliveira Sandes, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo
Parallel Optimal Pairwise Biological Sequence Comparison: Algorithms, Platforms, and Classification. ACM Comput. Surv. 48 (4) (2016)
Alessandro Ferreira Leite, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Christine Eisenbeis, Claude Tadonki, Célia Ghedini Ralha
Power-aware server consolidation for federated clouds. Concurr. Comput. Pract. Exp. 28 (12) (2016)
Marco Antonio C. de Figueiredo, Edans F. de O. Sandes, Alba Cristina Magalhaes Alves de Melo
Parallel Megabase DNA Sequence Comparison with OpenCL. HiPC (2015)
Daniel Sundfeld, George Teodoro, Alba Cristina Magalhaes Alves de Melo
Parallel A-Star Multiple Sequence Alignment with Locality-Sensitive Hash Functions. CISIS (2015)
Alessandro Ferreira Leite, Vander Alves, Genaína Nunes Rodrigues, Claude Tadonki, Christine Eisenbeis, Alba Cristina Magalhaes Alves de Melo
Automating Resource Selection and Configuration in Inter-clouds through a Software Product Line Method. CLOUD (2015)
Alba Cristina Magalhaes Alves de Melo, Srinivas Aluru, David A. Bader
HiCOMB Introduction and Committees. IPDPS Workshops (2014)
Felipe Pontes Guimarães, Pedro Célestin, Daniel Macêdo Batista, Genaína Nunes Rodrigues, Alba Cristina Magalhaes Alves de Melo
A Framework for Adaptive Fault-Tolerant Execution of Workflows in the Grid: Empirical and Theoretical Analysis. J. Grid Comput. 12 (1) (2014)
Li Weigang, Edans F. de O. Sandes, Jianya Zheng, Alba Cristina Magalhaes Alves de Melo, Lorna Uden
Querying dynamic communities in online social networks. J. Zhejiang Univ. Sci. C 15 (2) (2014)
Alessandro Ferreira Leite, Tainá Raiol, Claude Tadonki, Maria Emília M. T. Walter, Christine Eisenbeis, Alba Cristina Magalhaes Alves de Melo
Excalibur: an autonomic cloud architecture for executing parallel applications. CloudDP@EuroSys (2014)
Edans Flavius de Oliveira Sandes, Célia Ghedini Ralha, Alba Cristina Magalhaes Alves de Melo
An agent-based solution for dynamic multi-node wavefront balancing in biological sequence comparison. Expert Syst. Appl. 41 (10) (2014)
Edans F. de O. Sandes, Guillermo Miranda, Alba Cristina Magalhaes Alves de Melo, Xavier Martorell, Eduard Ayguadé
Fine-grain parallel megabase sequence comparison with multiple heterogeneous GPUs. PPOPP (2014)
Edans F. de O. Sandes, Guillermo Miranda, Alba Cristina Magalhaes Alves de Melo, Xavier Martorell, Eduard Ayguadé
CUDAlign 3.0: Parallel Biological Sequence Comparison in Large GPU Clusters. CCGRID (2014)
Luiz De Rose, Jan Treibig, William Jalby, Alba Cristina Magalhaes Alves de Melo, David Abramson, Alastair F. Donaldson, Tomàs Margalef
Topic 11: Multicore and Manycore Programming - (Introduction). Euro-Par (2013)
Fernando Machado Mendonca, Alba Cristina Magalhaes Alves de Melo
Biological Sequence Comparison on Hybrid Platforms with Dynamic Workload Adjustment. IPDPS Workshops (2013)
Khaled Hamidouche, Fernando Machado Mendonca, Joel Falcou, Alba Cristina Magalhaes Alves de Melo, Daniel Etiemble
Parallel Smith-Waterman Comparison on Multicore and Manycore Computing Platforms with BSP++. Int. J. Parallel Program. 41 (1) (2013)
Emerson de Araujo Macedo, Alba Cristina Magalhaes Alves de Melo, Gerson Henrique Pfitscher, Azzedine Boukerche
Multiple biological sequence alignment in heterogeneous multicore clusters with user-selectable task allocation policies. J. Supercomput. 63 (3) (2013)
Daniel Sundfeld, Alba Cristina Magalhaes Alves de Melo
MSA-GPU: Exact Multiple Sequence Alignment Using GPU. BSB (2013)
Guilherme Menegói, Tainá Raiol, João Victor de Araújo Oliveira, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Andrea Queiroz Maranhão, Ildinete Silva-Pereira, Anamélia Lorenzetti Bocca, Ana Paula Junqueira-Kipnis, Maria Emília M. T. Walter, André Kipnis, Marcelo de Macedo Brígido
A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome. BSB (2013)
Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo
Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences Using GPU. IEEE Trans. Parallel Distributed Syst. 24 (5) (2013)
Juan Fernando Eusse Giraldo, Nahri Moreano, Alba Cristina Magalhaes Alves de Melo, Ricardo Pezzuol Jacobi
A Protein Sequence Analysis Hardware Accelerator Based on Divergences. Int. J. Reconfigurable Comput. 2012 (2012)
Edans Flavius de Oliveira Sandes, Li Weigang, Alba Cristina Magalhaes Alves de Melo
Logical Model of Relationship for Online Social Networks and Performance Optimizing of Queries - WISE 2012 Challenge - T1: Performance Track Scalability Winner. WISE (2012)
Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi, Azzedine Boukerche
Parallel Simulated Annealing for Fragment Based Sequence Alignment. IPDPS Workshops (2012)
Edans Flavius de Oliveira Sandes, Jacir Luiz Bordim, Alba Cristina Magalhaes Alves de Melo, Yasuaki Ito
Record Route Elimination (RRE): An Energy-Efficient Broadcast Algorithm. ICNC (2012)
Azzedine Boukerche, Rodolfo Bezerra Batista, Alba Cristina Magalhaes Alves de Melo, Felipe Brandt Scarel, Lavir Antonio Bahia Carvalho de Souza
Exact Parallel Alignment of megabase genomic Sequences with Tunable Work Distribution. Int. J. Found. Comput. Sci. 23 (2) (2012)
Alessandro Ferreira Leite, Hammurabi das Chagas Mendes, Weigang Li, Alba Cristina Magalhaes Alves de Melo, Azzedine Boukerche
An architecture for P2P bag-of-tasks execution with multiple task allocation policies in desktop grids. Clust. Comput. 15 (4) (2012)
Alessandro Ferreira Leite, Alba Cristina Magalhaes Alves de Melo
Executing a biological sequence comparison application on a federated cloud environment. HiPC (2012)
Alessandro Ferreira Leite, Alba Cristina Magalhaes Alves de Melo
Energy-Aware Multi-Agent Server Consolidation in Federated Clouds. CloudComp (2012)
Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo
Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space. IPDPS (2011)
Emerson de Araujo Macedo, Alba Cristina Magalhaes Alves de Melo, Gerson Henrique Pfitscher, Azzedine Boukerche
Hybrid MPI/OpenMP Strategy for Biological Multiple Sequence Alignment with DIALIGN-TX in Heterogeneous Multicore Clusters. IPDPS Workshops (2011)
Felipe Pontes Guimarães, Alba Cristina Magalhaes Alves de Melo
User-Defined Adaptive Fault-Tolerant Execution of Workflows in the Grid. CIT (2011)
Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi, Azzedine Boukerche
A fragment based alignment in linear space. BIBM Workshops (2011)
Alisson Andrade, Alba Cristina Magalhaes Alves de Melo
A WS-Agreement-Based QoS Auditor Negotiation Mechanism for Grids. GRID (2011)
Juan Fernando Eusse Giraldo, Nahri Moreano, Ricardo Pezzuol Jacobi, Alba Cristina Magalhaes Alves de Melo
A HMMER hardware accelerator using divergences. DATE (2010)
Antonio Carlos de Arruda Junior, Alessandro Ferreira Leite, Cícero Roberto Ferreira de Almeida, Alba Cristina Magalhaes Alves de Melo, Li Weigang
Impact Analysis Model for Brasília Area Control Center using Multi-agent System with Reinforcement Learning. SEKE (2010)
Azzedine Boukerche, Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi
A Hardware Accelerator for the Fast Retrieval of DIALIGN Biological Sequence Alignments in Linear Space. IEEE Trans. Computers 59 (6) (2010)
Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo
CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences. PPOPP (2010)
Marcelo S. Sousa, Alba Cristina Magalhaes Alves de Melo, Azzedine Boukerche
An adaptive multi-policy grid service for biological sequence comparison. J. Parallel Distributed Comput. 70 (2) (2010)
Lidia A. Miranda, Marcos F. Caetano, Alba Cristina Magalhaes Alves de Melo, Jan Mendonca Correa, Jacir Luiz Bordim
Multiple Biological Sequence Alignment with a Parallel Island Injection Genetic Algorithm. HPCC (2010)
Azzedine Boukerche, Rodolfo Bezerra Batista, Alba Cristina Magalhaes Alves de Melo
Exact pairwise alignment of megabase genome biological sequences using a novel z-align parallel strategy. IPDPS (2009)
Hammurabi das Chagas Mendes, Weigang Li, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo
Bag-of-Tasks Self-Scheduling over Range-Queriable Search Overlays. NPC (2009)
Azzedine Boukerche, Marcelo Nardelli Pinto Santana, Alba Cristina Magalhaes Alves de Melo
A task allocation framework for biological sequence comparison applications in heterogeneous environments. IPDPS (2008)
Rodolfo Bezerra Batista, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo
A parallel strategy for biological sequence alignment in restricted memory space. J. Parallel Distributed Comput. 68 (4) (2008)
Glauber Scorsatto, Alba Cristina Magalhaes Alves de Melo
GrAMoS: A Flexible Service for WS-Agreement Monitoring in Grid Environments. Euro-Par (2008)
Azzedine Boukerche, Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi, Adson Ferreira da Rocha
An FPGA-Based Accelerator for Multiple Biological Sequence Alignment with DIALIGN. HiPC (2007)
Célia Ghedini Ralha, Jose Nelson C. Allemand, Alba Cristina Magalhaes Alves de Melo
A Four-layered Semantic Grid Architecture. SEKE (2007)
Azzedine Boukerche, Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi, Adson Ferreira da Rocha
Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space. IPDPS (2007)
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Edans Flavius de Oliveira Sandes, Mauricio Ayala-Rincón
An exact parallel algorithm to compare very long biological sequences in clusters of workstations. Clust. Comput. 10 (2) (2007)
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Maria Emília Telles Walter
Parallel strategies for the local biological sequence alignment in a cluster of workstations. J. Parallel Distributed Comput. 67 (2) (2007)
Marcelo Nardelli Pinto Santana, Alba Cristina Magalhaes Alves de Melo
Biological Sequence Comparison Application in Heterogeneous Environments with Dynamic Programming Algorithms. BSB (2007)
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo
Integrating coordinated checkpointing and recovery mechanisms into DSM synchronization barriers. ACM J. Exp. Algorithmics 11 (2006)
J. G. R. C. Lopes, Alba Cristina Magalhaes Alves de Melo, Mario A. R. Dantas, Célia Ghedini Ralha
A Proposal and Evaluation of a Mechanism for Grid Ontology Merge. HPCS (2006)
Tania Gomes Ramos, Alba Cristina Magalhaes Alves de Melo
An Extensible Resource Discovery Mechanism for Grid Computing Environments. CCGRID (2006)
Azzedine Boukerche, Marcelo S. Sousa, Alba Cristina Magalhaes Alves de Melo
A multiple task allocation framework for biological sequence comparison in a grid environment. IPDPS (2006)
Marcelo S. Sousa, Alba Cristina Magalhaes Alves de Melo
PackageBLAST: an adaptive multi-policy grid service for biological sequence comparison. SAC (2006)
Rodolfo Bezerra Batista, Alba Cristina Magalhaes Alves de Melo
Z-align: An Exact and Parallel Strategy for Local Biological Sequence Alignment in User-Restricted Memory Space. CLUSTER (2006)
Weigang Li, Marcos Vinícius Pinheiro Dib, Alba Cristina Magalhaes Alves de Melo
Method to Balance the Communication Among Multi-agents in Real Time Traffic Synchronization. FSKD (1) (2005)
Azzedine Boukerche, Jeferson G. Koch, Alba Cristina Magalhaes Alves de Melo
Integrating Coordinated Checkpointing and Recovery Mechanisms into DSM Synchronization Barriers. WEA (2005)
Alba Cristina Magalhaes Alves de Melo, Nilo S. B. Silva, Hammurabi das Chagas Mendes, Diego F. Aranha
Obtaining possible execution histories on multiple memory consistency models. SCCC (2005)
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Jeferson G. Koch, Cicero Roberto de Oliveira Galdino
Multiple Coherence and Coordinated Checkpointing Protocols for DSM Systems. ICPP Workshops (2005)
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Thomas Mailleux Santana
Parallel Strategies for Local Biological Sequence Alignment in a Cluster of Workstations. IPDPS (2005)
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Thomas Mailleux Santana
Parallel Smith-Waterman Algorithm for Local DNA Comparison in a Cluster of Workstations. WEA (2005)
Rodolfo Bezerra Batista, D. N. Silva, Alba Cristina Magalhaes Alves de Melo, Weigang Li
Using a DSM application to locally align DNA sequences. CCGRID (2004)
Alba Cristina Magalhaes Alves de Melo, Maria Emília M. T. Walter, Renata Cristina Faray Melo, Marcelo Nardelli Pinto Santana, Rodolfo Bezerra Batista
Local DNA Sequence Alignment in a Cluster ofWorkstations: Algorithms and Tools. J. Braz. Comput. Soc. 10 (2) (2004)
Weigang Li, Daniel Amaral Cardoso, Marcos Vinícius Pinheiro Dib, Alba Cristina Magalhaes Alves de Melo
Distributed Knowledge Based System Using Grid Computing for Real Time Air Traffic Synchronization - ATFMGC. SEKE (2004)
Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Maria Emília Telles Walter, Renata Cristina Faray Melo, Marcelo Nardelli Pinto Santana, Rodolfo Bezerra Batista
A Performance Evaluation of a Local DNA Sequence Alignment Algorithm on a Cluster of Workstations. IPDPS (2004)
Andre Riccioppo, Alba Cristina Magalhaes Alves de Melo
Parallel Biological Sequence Comparison in Heterogeneous Systems Using CORBA. WOB (2004)
Edward de Oliveira Ribeiro, Gustavo G. Zerlotini, Irving Lopes, Victor Ribeiro, Alba Cristina Magalhaes Alves de Melo, Maria Emília Telles Walter, Marcos Motta
Rede BIOFOCO: A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation. WOB (2004)
Renata Cristina Faray Melo, Maria Emília Telles Walter, Alba Cristina Magalhaes Alves de Melo, Rodolfo Bezerra Batista, Marcelo Nardelli Pinto Santana, Thelmo E. S. Martins, Tiago M. Fonseca
Comparing Two Long Biological Sequences Using a DSM System. Euro-Par (2003)
Rodolfo Bezerra Batista, Alerrandro L. A. C. Correa, Alba Cristina Magalhaes Alves de Melo
Computing Binary Space Partition Trees using a Scope Consistent DSM System in a Cluster of Workstations. PDP (2003)
Renata Cristina Faray Melo, Maria Emília Telles Walter, Alba Cristina Magalhaes Alves de Melo, Rodolfo Bezerra Batista
Parallel DNA Sequence Alignment Using a DSM System in a Cluster of Workstations. International Conference on Computational Science (2003)
Gláucia de Oliveira Dias, Alba Cristina Magalhaes Alves de Melo
Integrating Optimistic Virtual Synchrony to a CORBA Object Group Service. OTM (2002)
Cicero Roberto de Oliveira Galdino, Alba Cristina Magalhaes Alves de Melo
Application-Controlled Coherence Protocols for Scope Consistent Software DSMs. HPCN Europe (2001)
Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo
Using a Classifier System to Improve Dynamic Load Balancing. ICPP Workshops (2001)
Alba Cristina Magalhaes Alves de Melo, Simone Cintra Chagas
Visual-MCM: Visualising Execution Histories on Multiple Memory Consistency Models. ACPC (1999)
Alba Cristina Magalhaes Alves de Melo
Defining Uniform and Hybrid Memory Consistency Models on a Unified Framework. HICSS (1999)
Alba Cristina Magalhaes Alves de Melo
Multiple Memory Consistency Models on a SVM Parallel Programming Environment. OPODIS (1997)