Jakob Hull Havgaard

Publication Activity (10 Years)

Years Active: 2005-2020
Publications (10 Years): 4

Top Topics

Global Alignment

Graphics Hardware

Top Venues

Concurr. Comput. Pract. Exp.

Publications

Daniel Sundfeld, George Teodoro, Jakob Hull Havgaard, Jan Gorodkin, Alba C. M. A. Melo
Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities. Concurr. Comput. Pract. Exp. 32 (10) (2020)
Daniel Sundfeld, Jakob Hull Havgaard, Jan Gorodkin, Alba Cristina Magalhaes Alves de Melo
CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment. PDP (2017)
Milad Miladi, Alexander Junge, Fabrizio Costa, Stefan E. Seemann, Jakob Hull Havgaard, Jan Gorodkin, Rolf Backofen
RNAscClust: clustering RNA sequences using structure conservation and graph based motifs. Bioinform. 33 (14) (2017)
Daniel Sundfeld, Jakob Hull Havgaard, Alba Cristina Magalhaes Alves de Melo, Jan Gorodkin
Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment. Bioinform. 32 (8) (2016)
Bogumil Kaczkowski, Elfar Torarinsson, Kristin Reiche, Jakob Hull Havgaard, Peter F. Stadler, Jan Gorodkin
Structural profiles of human miRNA families from pairwise clustering. Bioinform. 25 (3) (2009)
Frank Panitz, Henrik Stengaard, Henrik Hornshøj, Jan Gorodkin, Jakob Hedegaard, Susanna Cirera, Bo Thomsen, Lone B. Madsen, Anette Høj, Rikke K. Vingborg, Bujie Zahn, Xuegang Wang, Xuefei Wang, Rasmus Wernersson, Claus B. Jørgensen, Karsten Scheibye-Knudsen, Troels Arvin, Steen Lumholdt, Milena Sawera, Trine Green, Bente J. Nielsen, Jakob Hull Havgaard, Søren Brunak, Merete Fredholm, Christian Bendixen
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Elfar Torarinsson, Jakob Hull Havgaard, Jan Gorodkin
Multiple structural alignment and clustering of RNA sequences. Bioinform. 23 (8) (2007)
Jakob Hull Havgaard, Elfar Torarinsson, Jan Gorodkin
Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix. PLoS Comput. Biol. 3 (10) (2007)
Jan Gorodkin, Jakob Hull Havgaard, Milena Ensterö, Milena Sawera, Peter Jensen, M. Öhman, Merete Fredholm
MicroRNA sequence motifs reveal asymmetry between the stem arms. Comput. Biol. Chem. 30 (4) (2006)
Jakob Hull Havgaard, Rune B. Lyngsø, Gary D. Stormo, Jan Gorodkin
Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%. Bioinform. 21 (9) (2005)
Jakob Hull Havgaard, Rune B. Lyngsø, Jan Gorodkin
The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)