Rolf Backofen

ORCID

Publication Activity (10 Years)

Years Active: 1990-2023
Publications (10 Years): 41

Top Venues

Bioinform.

Nucleic Acids Res.

BMC Bioinform.

Algorithms Mol. Biol.

Saarland University, Saarbrücken, Germany (PHD)

Education History

Saarland University, Saarbrücken, Germany

PHD

Publications

Anup Kumar, Björn A. Grüning, Rolf Backofen
Transformer-based tool recommendation system in Galaxy. BMC Bioinform. 24 (1) (2023)
Richard A. Schäfer, Dominik Rabsch, Guillaume E. Scholz, Peter F. Stadler, Wolfgang R. Hess, Rolf Backofen, Jörg Fallmann, Björn Voß
RNA interaction format: a general data format for RNA interactions. Bioinform. 39 (10) (2023)
Nils Hoffmann, Irena Maus, Sebastian Beier, Peter Belmann, Jan Krüger, Andreas Tauch, Alexander Goesmann, Roland Eils, Peer Bork, Oliver Kohlbacher, Ursula Kummer, Rolf Backofen, Ivo Buchhalter, Alexander Sczyrba
Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities. CoRDI (2023)
Rick Gelhausen, Teresa Müller, Sarah L. Svensson, Omer S. Alkhnbashi, Cynthia M. Sharma, Florian Eggenhofer, Rolf Backofen
RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria. Briefings Bioinform. 23 (2) (2022)
Michael Uhl, Dominik Rabsch, Florian Eggenhofer, Rolf Backofen
Peakhood: individual site context extraction for CLIP-seq peak regions. Bioinform. 38 (4) (2022)
Simon Bray, Tim Dudgeon, Rachael Skyner, Rolf Backofen, Björn A. Grüning, Frank von Delft
Galaxy workflows for fragment-based virtual screening: a case study on the SARS-CoV-2 main protease. J. Cheminformatics 14 (1) (2022)
Joachim Wolff, Rolf Backofen, Björn A. Grüning
Robust and efficient single-cell Hi-C clustering with approximate k-nearest neighbor graphs. Bioinform. 37 (22) (2021)
Miguel Roncoroni, Bert Droesbeke, Ignacio Eguinoa, Kim De Ruyck, Flora D'anna, Dilmurat Yusuf, Björn A. Grüning, Rolf Backofen, Frederik Coppens
A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive. Bioinform. 37 (21) (2021)
Victor Alexandre Padilha, Omer S. Alkhnbashi, Van Dinh Tran, Shiraz A. Shah, André C. P. L. F. de Carvalho, Rolf Backofen
Casboundary: automated definition of integral Cas cassettes. Bioinform. 37 (10) (2021)
Lucille Lopez-Delisle, Leily Rabbani, Joachim Wolff, Vivek Bhardwaj, Rolf Backofen, Björn A. Grüning, Fidel Ramírez, Thomas Manke
pyGenomeTracks: reproducible plots for multivariate genomic datasets. Bioinform. 37 (3) (2021)
Omer S. Alkhnbashi, Alexander Mitrofanov, Robson Bonidia, Martin Raden, Van Dinh Tran, Florian Eggenhofer, Shiraz A. Shah, Ekrem Öztürk, Victor Alexandre Padilha, Danilo Sipoli Sanches, André C. P. L. F. de Carvalho, Rolf Backofen
CRISPRloci: comprehensive and accurate annotation of CRISPR-Cas systems. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Joachim Wolff, Nezar Abdennur, Rolf Backofen, Björn A. Grüning
Scool: a new data storage format for single-cell Hi-C data. Bioinform. 37 (9) (2021)
Joachim Wolff, Leily Rabbani, Ralf Gilsbach, Gautier Richard, Thomas Manke, Rolf Backofen, Björn A. Grüning
Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Martin Raden, Teresa Müller, Stefan Mautner, Rick Gelhausen, Rolf Backofen
The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessment. BMC Bioinform. 21 (1) (2020)
Dinh Van Tran, Alessandro Sperduti, Rolf Backofen, Fabrizio Costa
Heterogeneous networks integration for disease-gene prioritization with node kernels. Bioinform. 36 (9) (2020)
Teresa Müller, Milad Miladi, Frank Hutter, Ivo L. Hofacker, Sebastian Will, Rolf Backofen
The locality dilemma of Sankoff-like RNA alignments. Bioinform. 36 (Supplement-1) (2020)
Milad Miladi, Martin Raden, Sven Diederichs, Rolf Backofen
MutaRNA: analysis and visualization of mutation-induced changes in RNA structure. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Milad Miladi, Martin Raden, Sebastian Will, Rolf Backofen
Fast and accurate structure probability estimation for simultaneous alignment and folding of RNAs with Markov chains. Algorithms Mol. Biol. 15 (1) (2020)
Milad Miladi, Soheila Montaseri, Rolf Backofen, Martin Raden
Integration of accessibility data from structure probing into RNA-RNA interaction prediction. Bioinform. 35 (16) (2019)
Jörg Fallmann, Pavankumar Videm, Andrea Bagnacani, Bérénice Batut, Maria A. Doyle, Tomas Klingström, Florian Eggenhofer, Peter F. Stadler, Rolf Backofen, Björn A. Grüning
The RNA workbench 2.0: next generation RNA data analysis. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Rick Gelhausen, Sebastian Will, Ivo L. Hofacker, Rolf Backofen, Martin Raden
IntaRNAhelix-composing RNA-RNA interactions from stable inter-molecular helices boosts bacterial sRNA target prediction. J. Bioinform. Comput. Biol. 17 (5) (2019)
Rolf Backofen, Yael Mandel-Gutfreund, Uwe Ohler, Gabriele Varani
Advances and Challenges in Protein-RNA Recognition, Regulation and Prediction (Dagstuhl Seminar 19342). Dagstuhl Reports 9 (8) (2019)
Milad Miladi, Martin Raden, Sebastian Will, Rolf Backofen
Fast and Accurate Structure Probability Estimation for Simultaneous Alignment and Folding of RNAs. WABI (2019)
Stefan Mautner, Rolf Backofen, Fabrizio Costa
Progress Towards Graph Optimization: Efficient Learning of Vector to Graph Space Mappings. ESANN (2019)
Rick Gelhausen, Sebastian Will, Ivo L. Hofacker, Rolf Backofen, Martin Raden
Constraint Maximal Inter-molecular Helix Lengths within RNA-RNA Interaction Prediction Improves Bacterial sRNA Target Prediction. BIOINFORMATICS (2019)
Stefan Mautner, Soheila Montaseri, Milad Miladi, Martin Raden, Fabrizio Costa, Rolf Backofen
ShaKer: RNA SHAPE prediction using graph kernel. Bioinform. 35 (14) (2019)
Joachim Wolff, Vivek Bhardwaj, Stephan Nothjunge, Gautier Richard, Gina Renschler, Ralf Gilsbach, Thomas Manke, Rolf Backofen, Fidel Ramírez, Björn A. Grüning
Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Florian Eggenhofer, Ivo L. Hofacker, Rolf Backofen, Christian Höner zu Siederdissen
CMV: visualization for RNA and protein family models and their comparisons. Bioinform. 34 (15) (2018)
Alexander Gawronski, Michael Uhl, Yajia Zhang, Yen-Yi Lin, Yashar S. Niknafs, Varune R. Ramnarine, Rohit Malik, Felix Feng, Arul M. Chinnaiyan, Colin C. Collins, Süleyman Cenk Sahinalp, Rolf Backofen
MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactions. Bioinform. 34 (18) (2018)
Martin Raden, Syed M. Ali, Omer S. Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A. Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen Lott, Mostafa M. Mohamed, Alexander Mattheis, Milad Miladi, Andreas S. Richter, Sebastian Will, Joachim Wolff, Patrick R. Wright, Rolf Backofen
Freiburg RNA tools: a central online resource for RNA-focused research and teaching. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Martin Mann, Hans-Peter Kahle, Matthias Beck, Bela Johannes Bender, Heinrich Spiecker, Rolf Backofen
MICA: Multiple interval-based curve alignment. SoftwareX 7 (2018)
Tugçe Aktas, Ibrahim Avsar Ilik, Daniel Maticzka, Vivek Bhardwaj, Cecilia Pessoa Rodrigues, Gerhard Mittler, Thomas Manke, Rolf Backofen, Asifa Akhtar
invasion of the human genome. Nat. 544 (7648) (2017)
Björn A. Grüning, Jörg Fallmann, Dilmurat Yusuf, Sebastian Will, Anika Erxleben, Florian Eggenhofer, Torsten Houwaart, Bérénice Batut, Pavankumar Videm, Andrea Bagnacani, Markus Wolfien, Steffen Lott, Youri Hoogstrate, Wolfgang R. Hess, Olaf Wolkenhauer, Steve Hoffmann, Altuna Akalin, Uwe Ohler, Peter F. Stadler, Rolf Backofen
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Martin Mann, Patrick R. Wright, Rolf Backofen
IntaRNA 2.0: enhanced and customizable prediction of RNA-RNA interactions. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Rolf Backofen, Yael Mandel-Gutfreund, Uwe Ohler, Gabriele Varani
Computational Challenges in RNA-Based Gene Regulation: Protein-RNA Recognition, Regulation and Prediction (Dagstuhl Seminar 17252). Dagstuhl Reports 7 (6) (2017)
Milad Miladi, Alexander Junge, Fabrizio Costa, Stefan E. Seemann, Jakob Hull Havgaard, Jan Gorodkin, Rolf Backofen
RNAscClust: clustering RNA sequences using structure conservation and graph based motifs. Bioinform. 33 (14) (2017)
Björn A. Grüning, Eric Rasche, Boris Rebolledo-Jaramillo, Carl Eberhard, Torsten Houwaart, John Chilton, Nate Coraor, Rolf Backofen, James Taylor, Anton Nekrutenko
Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers. PLoS Comput. Biol. 13 (5) (2017)
Omer S. Alkhnbashi, Shiraz A. Shah, Roger A. Garrett, Sita J. Saunders, Fabrizio Costa, Rolf Backofen
Characterizing leader sequences of CRISPR loci. Bioinform. 32 (17) (2016)
João Victor de Araújo Oliveira, Fabrizio Costa, Rolf Backofen, Peter F. Stadler, Maria Emília Telles Walter, Jana Hertel
SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification. BMC Bioinform. 17 (S-18) (2016)
Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka
AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments. RECOMB (2016)
Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka
AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments. CoRR (2016)
Robert Kleinkauf, Torsten Houwaart, Rolf Backofen, Martin Mann
antaRNA - Multi-objective inverse folding of pseudoknot RNA using ant-colony optimization. BMC Bioinform. 16 (2015)
Sebastian Will, Christina Otto, Milad Miladi, Mathias Möhl, Rolf Backofen
SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristics. Bioinform. 31 (15) (2015)
Robert Kleinkauf, Martin Mann, Rolf Backofen
antaRNA: ant colony-based RNA sequence design. Bioinform. 31 (19) (2015)
Jing Qin, Markus Fricke, Manja Marz, Peter F. Stadler, Rolf Backofen
Graph-distance distribution of the Boltzmann ensemble of RNA secondary structures. Algorithms Mol. Biol. 9 (2014)
Kousik Kundu, Rolf Backofen
Cluster based prediction of PDZ-peptide interactions. BMC Genom. 15 (S-1) (2014)
Omer S. Alkhnbashi, Fabrizio Costa, Shiraz A. Shah, Roger A. Garrett, Sita J. Saunders, Rolf Backofen
CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci. Bioinform. 30 (17) (2014)
Kousik Kundu, Martin Mann, Fabrizio Costa, Rolf Backofen
MoDPepInt: an interactive web server for prediction of modular domain-peptide interactions. Bioinform. 30 (18) (2014)
Pavankumar Videm, Dominic Rose, Fabrizio Costa, Rolf Backofen
Blockclust: efficient clustering and classification of non-coding rnas from short Read RNA-seq profiles. GCB (2014)
Martin Mann, Rolf Backofen
Exact methods for lattice protein models. Bio Algorithms Med Syst. 10 (4) (2014)
Pavankumar Videm, Dominic Rose, Fabrizio Costa, Rolf Backofen
BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles. Bioinform. 30 (12) (2014)
Fabrizio Costa, Steffen Heyne, Dominic Rose, Rolf Backofen
Scalable structural clustering of local RNA secondary structures. CMSR@ECCB (2014)
Mika Amit, Rolf Backofen, Steffen Heyne, Gad M. Landau, Mathias Möhl, Christina Otto, Sebastian Will
Local Exact Pattern Matching for Non-FixedRNA Structures. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (1) (2014)
Martin Mann, Feras Nahar, Norah Schnorr, Rolf Backofen, Peter F. Stadler, Christoph Flamm
Atom mapping with constraint programming. Algorithms Mol. Biol. 9 (2014)
Christina Otto, Mathias Möhl, Steffen Heyne, Mika Amit, Gad M. Landau, Rolf Backofen, Sebastian Will
ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs. BMC Bioinform. 15 (2014)
Jérôme Waldispühl, Charles W. O'Donnell, Sebastian Will, Srinivas Devadas, Rolf Backofen, Bonnie Berger
Simultaneous Alignment and Folding of Protein Sequences. J. Comput. Biol. 21 (7) (2014)
Patrick R. Wright, Jens Georg, Martin Mann, Dragos Alexandru Sorescu, Andreas S. Richter, Steffen Lott, Robert Kleinkauf, Wolfgang R. Hess, Rolf Backofen
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Sebastian Will, Christina Schmiedl, Milad Miladi, Mathias Möhl, Rolf Backofen
SPARSE: Quadratic Time Simultaneous Alignment and Folding of RNAs without Sequence-Based Heuristics. RECOMB (2013)
Kousik Kundu, Fabrizio Costa, Rolf Backofen
A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human SH3 domains. Bioinform. 29 (13) (2013)
Sebastian Will, Michael F. Siebauer, Steffen Heyne, Jan Engelhardt, Peter F. Stadler, Kristin Reiche, Rolf Backofen
LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search. Algorithms Mol. Biol. 8 (2013)
Dietrich Rebholz-Schuhmann, Senay Kafkas, Jee-Hyub Kim, Chen Li, Antonio Jimeno-Yepes, Robert Hoehndorf, Rolf Backofen, Ian Lewin
Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources. J. Biomed. Semant. 4 (2013)
Martin Mann, Feras Nahar, Heinz Ekker, Rolf Backofen, Peter F. Stadler, Christoph Flamm
Atom Mapping with Constraint Programming. CP (2013)
Rolf Backofen, Markus Fricke, Manja Marz, Jing Qin, Peter F. Stadler
Distribution of Graph-Distances in Boltzmann Ensembles of RNA Secondary Structures. WABI (2013)
Christina Schmiedl, Mathias Möhl, Steffen Heyne, Mika Amit, Gad M. Landau, Sebastian Will, Rolf Backofen
Exact Pattern Matching for RNA Structure Ensembles. RECOMB (2012)
Mika Amit, Rolf Backofen, Steffen Heyne, Gad M. Landau, Mathias Möhl, Christina Schmiedl, Sebastian Will
Local Exact Pattern Matching for Non-fixed RNA Structures. CPM (2012)
Dragos Alexandru Sorescu, Mathias Möhl, Martin Mann, Rolf Backofen, Sebastian Will
CARNA - alignment of RNA structure ensembles. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Steffen Heyne, Fabrizio Costa, Dominic Rose, Rolf Backofen
GraphClust: alignment-free structural clustering of local RNA secondary structures. Bioinform. 28 (12) (2012)
Nuno D. Mendes, Steffen Heyne, Ana T. Freitas, Marie-France Sagot, Rolf Backofen
Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches. Bioinform. 28 (23) (2012)
Martin Mann, Rhodri Saunders, Cameron Smith, Rolf Backofen, Charlotte M. Deane
Producing High-Accuracy Lattice Models from Protein Atomic Coordinates Including Side Chains. Adv. Bioinformatics 2012 (2012)
Saad Sheikh, Rolf Backofen, Yann Ponty
Impact of the Energy Model on the Complexity of RNA Folding with Pseudoknots. CPM (2012)
Rolf Backofen, Gad M. Landau, Mathias Möhl, Dekel Tsur, Oren Weimann
Fast RNA structure alignment for crossing input structures. J. Discrete Algorithms 9 (1) (2011)
Stefan E. Seemann, Peter Menzel, Rolf Backofen, Jan Gorodkin
The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Rolf Backofen, Dekel Tsur, Shay Zakov, Michal Ziv-Ukelson
Sparse RNA folding: Time and space efficient algorithms. J. Discrete Algorithms 9 (1) (2011)
Fernando Meyer, Stefan Kurtz, Rolf Backofen, Sebastian Will, Michael Beckstette
Structator: fast index-based search for RNA sequence-structure patterns. BMC Bioinform. 12 (2011)
Dominic Rose, Michael Hiller, Katharina Schutt, Jörg Hackermüller, Rolf Backofen, Peter F. Stadler
Computational discovery of human coding and non-coding transcripts with conserved splice sites. Bioinform. 27 (14) (2011)
Stefan E. Seemann, Andreas S. Richter, Tanja Gesell, Rolf Backofen, Jan Gorodkin
PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences. Bioinform. 27 (2) (2011)
Stefan E. Seemann, Andreas S. Richter, Jan Gorodkin, Rolf Backofen
Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions. Algorithms Mol. Biol. 5 (2010)
Mathias Möhl, Sebastian Will, Rolf Backofen
Lifting Prediction to Alignment of RNA Pseudoknots. J. Comput. Biol. 17 (3) (2010)
Rolf Backofen, Hamidreza Chitsaz, Ivo L. Hofacker, Süleyman Cenk Sahinalp, Peter F. Stadler
Session Introduction. Pacific Symposium on Biocomputing (2010)
Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp
Sparsification of RNA structure prediction including pseudoknots. Algorithms Mol. Biol. 5 (2010)
Sergiy Bogomolov, Martin Mann, Björn Voß, Andreas Podelski, Rolf Backofen
Shape-based Barrier Estimation for RNAs. GCB (2010)
Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp
Fast prediction of RNA-RNA interaction. Algorithms Mol. Biol. 5 (2010)
Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp
Sparsification of RNA Structure Prediction Including Pseudoknots. WABI (2010)
Raheleh Salari, Mathias Möhl, Sebastian Will, Süleyman Cenk Sahinalp, Rolf Backofen
Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding. RECOMB (2010)
Cameron Smith, Steffen Heyne, Andreas S. Richter, Sebastian Will, Rolf Backofen
Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Andreas S. Richter, Christian Schleberger, Rolf Backofen, Claudia Steglich
Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1. Bioinform. 26 (1) (2010)
Rileen Sinha, Thorsten Lenser, Niels Jahn, Ulrike Gausmann, Swetlana Friedel, Karol Szafranski, Klaus Huse, Philip Rosenstiel, Jochen Hampe, Stefan Schuster, Michael Hiller, Rolf Backofen, Matthias Platzer
TassDB2 - A comprehensive database of subtle alternative splicing events. BMC Bioinform. 11 (2010)
Mathias Möhl, Sebastian Will, Rolf Backofen
Lifting Prediction to Alignment of RNA Pseudoknots. RECOMB (2009)
Steffen Heyne, Sebastian Will, Michael Beckstette, Rolf Backofen
Lightweight comparison of RNAs based on exact sequence-structure matches. Bioinform. 25 (16) (2009)
Rolf Backofen, Gad M. Landau, Mathias Möhl, Dekel Tsur, Oren Weimann
Fast RNA Structure Alignment for Crossing Input Structures. CPM (2009)
Jérôme Waldispühl, Charles W. O'Donnell, Sebastian Will, Srinivas Devadas, Rolf Backofen, Bonnie Berger
Simultaneous Alignment and Folding of Protein Sequences. RECOMB (2009)
Martin Mann, Rolf Backofen, Sebastian Will
Equivalence Classes of Optimal Structures in HP Protein Models Including Side Chains CoRR (2009)
Rainer Pudimat, Rolf Backofen, Ernst Günter Schukat-Talamazzini
Fast Feature Subset Selection in Biological Sequence Analysis. Int. J. Pattern Recognit. Artif. Intell. 23 (2) (2009)
Martin Mann, Cameron Smith, Mohamad Rabbath, Marlien Edwards, Sebastian Will, Rolf Backofen
CPSP-web-tools: a server for 3D lattice protein studies. Bioinform. 25 (5) (2009)
Hamidreza Chitsaz, Raheleh Salari, Süleyman Cenk Sahinalp, Rolf Backofen
A partition function algorithm for interacting nucleic acid strands. Bioinform. 25 (12) (2009)
Martin Mann, Mohamed Abou Hamra, Kathleen Steinhöfel, Rolf Backofen
Constraint-based Local Move Definitions for Lattice Protein Models Including Side Chains CoRR (2009)
Rolf Backofen, Dekel Tsur, Shay Zakov, Michal Ziv-Ukelson
Sparse RNA Folding: Time and Space Efficient Algorithms. CPM (2009)
Hamidreza Chitsaz, Rolf Backofen, Süleyman Cenk Sahinalp
biRNA: Fast RNA-RNA Binding Sites Prediction. WABI (2009)
Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp
Fast Prediction of RNA-RNA Interaction. WABI (2009)
Anke Busch, Andreas S. Richter, Rolf Backofen
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions. Bioinform. 24 (24) (2008)

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Publication Activity (10 Years)

Top Topics

Top Venues

Rolf Backofen