Ana T. Freitas

Publication Activity (10 Years)

Years Active: 2001-2015
Publications (10 Years): 0

Top Topics

Future Directions

Data Management

Natural Sciences

Efficient Retrieval

Top Venues

Briefings Bioinform.

J. Biomed. Semant.

Publications

Catia M. Machado, Dietrich Rebholz-Schuhmann, Ana T. Freitas, Francisco M. Couto
The semantic web in translational medicine: current applications and future directions. Briefings Bioinform. 16 (1) (2015)
Filipe Ferreira, Miguel E. Coimbra, Raquel Bairrão, Ricardo Viera, Ana T. Freitas, Luís M. S. Russo, José Borbinha
Data Management in Metagenomics: A Risk Management Approach. Int. J. Digit. Curation 9 (1) (2014)
Francisco Fernandes, Ana T. Freitas
slaMEM: efficient retrieval of maximal exact matches using a sampled LCP array. Bioinform. 30 (4) (2014)
Miguel E. Coimbra, Francisco Fernandes, Luís M. S. Russo, Ana T. Freitas
Parallel efficient aligner of pyrosequencing reads. EuroMPI (2013)
Catia M. Machado, Ana T. Freitas, Francisco M. Couto
Enrichment analysis applied to disease prognosis. J. Biomed. Semant. 4 (2013)
Catia M. Machado, Francisco M. Couto, Alexandra R. Fernandes, Susana Santos, Ana T. Freitas
Toward a Translational Medicine Approach for Hypertrophic Cardiomyopathy. ITBAM (2012)
Nuno D. Mendes, Steffen Heyne, Ana T. Freitas, Marie-France Sagot, Rolf Backofen
Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches. Bioinform. 28 (23) (2012)
Francisco Fernandes, Paulo G. S. da Fonseca, Luís M. S. Russo, Arlindo L. Oliveira, Ana T. Freitas
Efficient alignment of pyrosequencing reads for re-sequencing applications. BMC Bioinform. 12 (2011)
Dulce Calçada, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira
Flr1 regulatory Network Using an S-System Formalism. J. Bioinform. Comput. Biol. 9 (5) (2011)
Dário Abdulrehman, Pedro T. Monteiro, Miguel C. Teixeira, Nuno P. Mira, Artur B. Lourenço, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Alexandre P. Francisco, Sara C. Madeira, Ricardo Santos Aires, Arlindo L. Oliveira, Isabel Sá-Correia, Ana T. Freitas
through a web services interface. Nucleic Acids Res. 39 (Database-Issue) (2011)
Dulce Calçada, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira
Quantitative Modeling the Saccharomyces cerevisiae FLR1 Regulatory Network Using an S-System Formalism. HISB (2011)
Catia M. Machado, Francisco M. Couto, Alexandra R. Fernandes, Susana Santos, Nuno Cardim, Ana T. Freitas
Semantic characterization of hypertrophic cardiomyopathy disease. BIBM Workshops (2010)
Alexandre P. Francisco, Sophie Schbath, Ana T. Freitas, Arlindo L. Oliveira
Using graph modularity analysis to identify transcription factor binding sites. BIBM Workshops (2010)
Pedro T. Monteiro, Ana T. Freitas, Delphine Ropers, Radu Mateescu, Hidde de Jong
Modeling and formal verification of biological regulatory networks: An integrative approach. BIBM Workshops (2010)
Catia M. Machado, Francisco M. Couto, Alexandra R. Fernandes, Susana Santos, Nuno Cardim, Ana T. Freitas
Unraveling Hypertrophic Cardiomyopathy Variability. ERCIM News 2010 (82) (2010)
Pedro T. Monteiro, Estelle Dumas, Bruno Besson, Radu Mateescu, Michel Page, Ana T. Freitas, Hidde de Jong
A service-oriented architecture for integrating the modeling and formal verification of genetic regulatory networks. BMC Bioinform. 10 (2009)
Francisco Fernandes, Luísa Pereira, Ana T. Freitas
CSA: An efficient algorithm to improve circular DNA multiple alignment. BMC Bioinform. 10 (2009)
Alexandre P. Francisco, Arlindo L. Oliveira, Ana T. Freitas
Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph. ISBRA (2008)
Ana C. Casimiro, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance. BMC Bioinform. 9 (2008)
Pedro T. Monteiro, Nuno D. Mendes, Miguel C. Teixeira, Sofia d'Orey, Sandra Tenreiro, Nuno P. Mira, Hélio Pais, Alexandre P. Francisco, Alexandra M. Carvalho, Artur B. Lourenço, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas
. Nucleic Acids Res. 36 (Database-Issue) (2008)
Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde de Jong
Temporal Logic Patterns for Querying Qualitative Models of Genetic Regulatory Networks. ECAI (2008)
Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde de Jong
Temporal logic patterns for querying dynamic models of cellular interaction networks. ECCB (2008)
Miguel C. Teixeira, Pedro T. Monteiro, Pooja Jain, Sandra Tenreiro, Alexandra R. Fernandes, Nuno P. Mira, Marta Alenquer, Ana T. Freitas, Arlindo L. Oliveira, Isabel Sá-Correia
. Nucleic Acids Res. 34 (Database-Issue) (2006)
Nuno D. Mendes, Ana C. Casimiro, Pedro M. Santos, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas
MUSA: a parameter free algorithm for the identification of biologically significant motifs. Bioinform. 22 (24) (2006)
Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot
An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. 3 (2) (2006)
Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot
A highly scalable algorithm for the extraction of CIS-regulatory regions. APBC (2005)
Alexandra M. Carvalho, Arlindo L. Oliveira, Ana T. Freitas, Marie-France Sagot
A parallel algorithm for the extraction of structured motifs. SAC (2004)
Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot
Efficient Extraction of Structured Motifs Using Box-Links. SPIRE (2004)
Ana T. Freitas, Arlindo L. Oliveira
Implicit Resolution of the Chapman-Kolmogorov Equations for Sequential Circuits: An Application in Power Estimation. DATE (2003)
Ana T. Freitas, Arlindo L. Oliveira
Circuit partitioning techniques for power estimation using the full set of input correlations. ICECS (2001)