Sophie Schbath

Publication Activity (10 Years)

Years Active: 1995-2020
Publications (10 Years): 3

Top Topics

Practical Application

Statistical Significance

Top Venues

J. Comput. Biol.

PeerJ Comput. Sci.

Publications

Julie Hurel, Sophie Schbath, Stéphanie Bougeard, Mathieu Rolland, Mauro Petrillo, Fabrice Touzain
DUGMO: tool for the detection of unknown genetically modified organisms with high-throughput sequencing data for pure bacterial samples. BMC Bioinform. 21 (1) (2020)
Gaëtan Benoit, Mahendra Mariadassou, Stéphane Robin, Sophie Schbath, Pierre Peterlongo, Claire Lemaitre
SimkaMin: fast and resource frugal de novo comparative metagenomics. Bioinform. 36 (4) (2020)
Gaëtan Benoit, Pierre Peterlongo, Mahendra Mariadassou, Erwan Drezen, Sophie Schbath, Dominique Lavenier, Claire Lemaitre
-mer counting. PeerJ Comput. Sci. 2 (2016)
Sophie Schbath, Véronique Martin, Matthias Zytnicki, Julien Fayolle, Valentin Loux, Jean-François Gibrat
Mapping Reads on a Genomic Sequence: An Algorithmic Overview and a Practical Comparative Analysis. J. Comput. Biol. 19 (6) (2012)
Hugo Devillers, Sophie Schbath
Separating Significant Matches from Spurious Matches in DNA Sequences. J. Comput. Biol. 19 (1) (2012)
Afshin Fayyaz Movaghar, Guillaume Launay, Sophie Schbath, Jean-François Gibrat, François Rodolphe
Statistical Significance of Threading Scores. J. Comput. Biol. 19 (1) (2012)
Hugo Devillers, Hélène Chiapello, Sophie Schbath, Meriem El Karoui
Robustness Assessment of Whole Bacterial Genome Segmentations. J. Comput. Biol. 18 (9) (2011)
Valery T. Stefanov, Stéphane Robin, Sophie Schbath
Occurrence of structured motifs in random sequences: Arbitrary number of boxes. Discret. Appl. Math. 159 (8) (2011)
Alexandre P. Francisco, Sophie Schbath, Ana T. Freitas, Arlindo L. Oliveira
Using graph modularity analysis to identify transcription factor binding sites. BIBM Workshops (2010)
Hugo Devillers, Hélène Chiapello, Sophie Schbath, Meriem El Karoui
Assessing the Robustness of Complete Bacterial Genome Segmentations. RECOMB-CG (2010)
Sophie Schbath, Vincent Lacroix, Marie-France Sagot
Assessing the Exceptionality of Coloured Motifs in Networks. EURASIP J. Bioinform. Syst. Biol. 2009 (2009)
Franck Picard, Jean-Jacques Daudin, Michel Koskas, Sophie Schbath, Stéphane Robin
Assessing the Exceptionality of Network Motifs. J. Comput. Biol. 15 (1) (2008)
Fabrice Touzain, Sophie Schbath, Isabelle Debled-Rennesson, Bertrand Aigle, Gregory Kucherov, Pierre Leblond
SIGffRid: A tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics. BMC Bioinform. 9 (2008)
Valery T. Stefanov, Stéphane Robin, Sophie Schbath
Waiting times for clumps of patterns and for structured motifs in random sequences. Discret. Appl. Math. 155 (6-7) (2007)
Stéphane Robin, Sophie Schbath, Vincent Vandewalle
Statistical tests to compare motif count exceptionalities. BMC Bioinform. 8 (2007)
Stéphane Robin, Sophie Schbath
Numerical Comparison of Several Approximations of the Word Count Distribution in Random Sequences. J. Comput. Biol. 8 (4) (2002)
Stéphane Robin, Jean-Jacques Daudin, Hugues Richard, Marie-France Sagot, Sophie Schbath
Occurrence Probability of Structured Motifs in Random Sequences. J. Comput. Biol. 9 (6) (2002)
Gesine Reinert, Sophie Schbath, Michael S. Waterman
Probabilistic and Statistical Properties of Words: An Overview. J. Comput. Biol. 7 (1-2) (2000)
Sophie Schbath, Nathalie Bossard, Simon Tavaré
The Effect of Nonhomogeneous Clone Length Distribution on the Progress of an STS Mapping Project. J. Comput. Biol. 7 (1-2) (2000)
Sophie Schbath
An Overview on the Distribution of Word Counts in Markov Chains. J. Comput. Biol. 7 (1-2) (2000)
Gesine Reinert, Sophie Schbath
Compound Poisson and Poisson Process Approximations for Occurrences of Multiple Words in Markov Chains. J. Comput. Biol. 5 (2) (1998)
Sophie Schbath
An Efficient Statistic to Detect Over-and Under-Represented Words in DNA Sequences. J. Comput. Biol. 4 (2) (1997)
Sophie Schbath
Coverage Processes in Physical Mapping by Anchoring Random Clones. J. Comput. Biol. 4 (1) (1997)
Sophie Schbath, Bernard Prum, Elisabeth de Turckheim
Exceptional Motifs in Different Markov Chain Models for a Statistical Analysis of DNA Sequences. J. Comput. Biol. 2 (3) (1995)