Pierre Peterlongo

ORCID

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 24

Top Venues

University of Marne-la-Vallée, Marne la Vallée, France (PHD)

Education History

University of Marne-la-Vallée, Marne la Vallée, France

PHD

Publications

Téo Lemane, Nolan Lezzoche, Julien Lecubin, Eric Pelletier, Magali Lescot, Rayan Chikhi, Pierre Peterlongo
Indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets with kmindex and ORA. Nat. Comput. Sci. 4 (2) (2024)
Lucas Robidou, Pierre Peterlongo
: drastic improvement of Approximate Membership Query data-structures with counts. Bioinform. 39 (5) (2023)
Garance Gourdel, Anne Driemel, Pierre Peterlongo, Tatiana Starikovskaya
Pattern Matching Under rmDTW Distance. SPIRE (2022)
Garance Gourdel, Anne Driemel, Pierre Peterlongo, Tatiana Starikovskaya
Pattern matching under DTW distance. CoRR (2022)
Yoann Dufresne, Teo Lemane, Pierre Marijon, Pierre Peterlongo, Amatur Rahman, Marek Kokot, Paul Medvedev, Sebastian Deorowicz, Rayan Chikhi
-mers. Bioinform. 38 (18) (2022)
Teo Lemane, Rayan Chikhi, Pierre Peterlongo
-mer analyses. Bioinform. 38 (24) (2022)
Guy Arbitman, Shmuel T. Klein, Pierre Peterlongo, Dana Shapira
Approximate Hashing for Bioinformatics. DCC (2021)
Guy Arbitman, Shmuel T. Klein, Pierre Peterlongo, Dana Shapira
Approximate Hashing for Bioinformatics. CIAA (2021)
Lucas Robidou, Pierre Peterlongo
findere: Fast and Precise Approximate Membership Query. SPIRE (2021)
Antoine Limasset, Jean-François Flot, Pierre Peterlongo
Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs. Bioinform. 36 (2) (2020)
Antoine Limasset, Jean-François Flot, Pierre Peterlongo
Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs. Bioinform. 36 (5) (2020)
Gaëtan Benoit, Mahendra Mariadassou, Stéphane Robin, Sophie Schbath, Pierre Peterlongo, Claire Lemaitre
SimkaMin: fast and resource frugal de novo comparative metagenomics. Bioinform. 36 (4) (2020)
Camille Marchet, Lolita Lecompte, Antoine Limasset, Lucie Bittner, Pierre Peterlongo
A resource-frugal probabilistic dictionary and applications in bioinformatics. Discret. Appl. Math. 274 (2020)
Jarno Alanko, Hideo Bannai, Bastien Cazaux, Pierre Peterlongo, Jens Stoye
Finding all maximal perfect haplotype blocks in linear time. Algorithms Mol. Biol. 15 (1) (2020)
Lolita Lecompte, Pierre Peterlongo, Dominique Lavenier, Claire Lemaitre
SVJedi: genotyping structural variations with long reads. Bioinform. 36 (17) (2020)
Jarno Alanko, Hideo Bannai, Bastien Cazaux, Pierre Peterlongo, Jens Stoye
Finding All Maximal Perfect Haplotype Blocks in Linear Time. WABI (2019)
Antoine Limasset, Jean-François Flot, Pierre Peterlongo
Toward perfect reads. CoRR (2017)
Antoine Limasset, Guillaume Rizk, Rayan Chikhi, Pierre Peterlongo
Fast and scalable minimal perfect hashing for massive key sets. CoRR (2017)
Camille Marchet, Lolita Lecompte, Antoine Limasset, Lucie Bittner, Pierre Peterlongo
A resource-frugal probabilistic dictionary and applications in bioinformatics. CoRR (2017)
Antoine Limasset, Guillaume Rizk, Rayan Chikhi, Pierre Peterlongo
Fast and Scalable Minimal Perfect Hashing for Massive Key Sets. SEA (2017)
Gaëtan Benoit, Pierre Peterlongo, Mahendra Mariadassou, Erwan Drezen, Sophie Schbath, Dominique Lavenier, Claire Lemaitre
-mer counting. PeerJ Comput. Sci. 2 (2016)
Camille Marchet, Antoine Limasset, Lucie Bittner, Pierre Peterlongo
A Resource-frugal Probabilistic Dictionary and Applications in (Meta)Genomics. Stringology (2016)
Antoine Limasset, Bastien Cazaux, Eric Rivals, Pierre Peterlongo
Read mapping on de Bruijn graphs. BMC Bioinform. 17 (2016)
Camille Marchet, Antoine Limasset, Lucie Bittner, Pierre Peterlongo
A resource-frugal probabilistic dictionary and applications in (meta)genomics. CoRR (2016)
Antoine Limasset, Pierre Peterlongo
Read Mapping on de Bruijn graph. CoRR (2015)
Claire Lemaitre, Liviu Ciortuz, Pierre Peterlongo
Mapping-Free and Assembly-Free Discovery of Inversion Breakpoints from Raw NGS Reads. AlCoB (2014)
Maria Federico, Pierre Peterlongo, Nadia Pisanti, Marie-France Sagot
Rime: Repeat identification. Discret. Appl. Math. 163 (2014)
Erwan Drezen, Guillaume Rizk, Rayan Chikhi, Charles Deltel, Claire Lemaitre, Pierre Peterlongo, Dominique Lavenier
GATB: Genome Assembly & Analysis Tool Box. Bioinform. 30 (20) (2014)
Nicolas Maillet, Guillaume Collet, Thomas Vannier, Dominique Lavenier, Pierre Peterlongo
Commet: Comparing and combining multiple metagenomic datasets. BIBM (2014)
Pierre Peterlongo, Rayan Chikhi
Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer. BMC Bioinform. 13 (2012)
Nicolas Maillet, Claire Lemaitre, Rayan Chikhi, Dominique Lavenier, Pierre Peterlongo
Compareads: comparing huge metagenomic experiments. BMC Bioinform. 13 (S-19) (2012)
Gustavo Akio Tominaga Sacomoto, Janice Kielbassa, Rayan Chikhi, Raluca Uricaru, Pavlos Antoniou, Marie-France Sagot, Pierre Peterlongo, Vincent Lacroix
KISSPLICE: de-novo calling alternative splicing events from RNA-seq data. BMC Bioinform. 13 (S-6) (2012)
Guillaume Holley, Pierre Peterlongo
BlastGraph: Intensive Approximate Pattern Matching in Sequence Graphs and de-Bruijn Graphs. Stringology (2012)
Maria Federico, Pierre Peterlongo, Nadia Pisanti, Marie-France Sagot
Finding Long and Multiple Repeats with Edit Distance. Stringology (2011)
Maria Federico, Pierre Peterlongo, Nadia Pisanti
An optimized filter for finding multiple repeats in DNA sequences. AICCSA (2010)
Pierre Peterlongo, Nicolas Schnel, Nadia Pisanti, Marie-France Sagot, Vincent Lacroix
Identifying SNPs without a Reference Genome by Comparing Raw Reads. SPIRE (2010)
Pierre Peterlongo, Jacques Nicolas, Dominique Lavenier, Raoul Vorc'h, Joël Querellou
c-GAMMA: Comparative Genome Analysis of Molecular Markers. PRIB (2009)
Matthias Gallé, Pierre Peterlongo, François Coste
In-Place Update of Suffix Array while Recoding Words. Int. J. Found. Comput. Sci. 20 (6) (2009)
Pierre Peterlongo, Gustavo Akio Tominaga Sacomoto, Alair Pereira do Lago, Nadia Pisanti, Marie-France Sagot
Lossless filter for multiple repeats with bounded edit distance. Algorithms Mol. Biol. 4 (2009)
Matthias Gallé, Pierre Peterlongo, François Coste
In-place Update of Suffix Array while Recoding Words. Stringology (2008)
Pierre Peterlongo, Julien Allali, Marie-France Sagot
Indexing Gapped-Factors Using a Tree. Int. J. Found. Comput. Sci. 19 (1) (2008)
Pierre Peterlongo, Laurent Noé, Dominique Lavenier, Van Hoa Nguyen, Gregory Kucherov, Mathieu Giraud
Optimal neighborhood indexing for protein similarity search. BMC Bioinform. 9 (2008)
Pierre Peterlongo, Nadia Pisanti, Frédéric Boyer, Alair Pereira do Lago, Marie-France Sagot
Lossless filter for multiple repetitions with Hamming distance. J. Discrete Algorithms 6 (3) (2008)
Pierre Peterlongo, Laurent Noé, Dominique Lavenier, Gilles Georges, Julien Jacques, Gregory Kucherov, Mathieu Giraud
Protein Similarity Search with Subset Seeds on a Dedicated Reconfigurable Hardware. PPAM (2007)
Pavlos Antoniou, Maxime Crochemore, Costas S. Iliopoulos, Pierre Peterlongo
Application of suffix trees for the acquisition of common motifs with gaps in a set of strings. LATA (2007)
Pavlos Antoniou, Jan Holub, Costas S. Iliopoulos, Borivoj Melichar, Pierre Peterlongo
Finding Common Motifs with Gaps Using Finite Automata. CIAA (2006)
Pierre Peterlongo, Julien Allali, Marie-France Sagot
The gapped-factor tree. Stringology (2006)
Pierre Peterlongo, Nadia Pisanti, Frédéric Boyer, Marie-France Sagot
Lossless Filter for Finding Long Multiple Approximate Repetitions Using a New Data Structure, the Bi-factor Array. SPIRE (2005)
Costas S. Iliopoulos, James A. M. McHugh, Pierre Peterlongo, Nadia Pisanti, Wojciech Rytter, Marie-France Sagot
A first approach to finding common motifs with gaps. Int. J. Found. Comput. Sci. 16 (6) (2005)
Costas S. Iliopoulos, James A. M. McHugh, Pierre Peterlongo, Nadia Pisanti, Wojciech Rytter, Marie-France Sagot
A First Approach to Finding Common Motifs With Gaps. Stringology (2004)

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Publication Activity (10 Years)

Top Topics

Top Venues

Pierre Peterlongo