François Coste

Publication Activity (10 Years)

Years Active: 1998-2023
Publications (10 Years): 10

Top Topics

Protein Sequences

Positive Examples

Galois Lattices

Top Venues

Publications

Olivier Dennler, François Coste, Samuel Blanquart, Catherine Belleannée, Nathalie Théret
Phylogenetic inference of the emergence of sequence modules and protein-protein interactions in the ADAMTS-TSL family. PLoS Comput. Biol. 19 (8) (2023)
Nicolas Buton, François Coste, Yann Le Cunff
Predicting enzymatic function of protein sequences with attention. Bioinform. 39 (10) (2023)
Hugo Talibart, François Coste
PPalign: optimal alignment of Potts models representing proteins with direct coupling information. BMC Bioinform. 22 (1) (2021)
François Coste
Deep learning languages: a key fundamental shift from probabilities to weights? CoRR (2019)
Witold Dyrka, François Coste, Juliette Talibart
Estimating probabilistic context-free grammars for proteins using contact map constraints. CoRR (2018)
Mateusz Pyzik, François Coste, Witold Dyrka
How to measure the topological quality of protein parse trees? ICGI (2018)
François Coste, Jacques Nicolas
Learning local substitutable context-free languages from positive examples in polynomial time and data by reduction. ICGI (2018)
Clovis Galiez, Christophe N. Magnan, François Coste, Pierre Baldi
VIRALpro: a tool to identify viral capsid and tail sequences. Bioinform. 32 (9) (2016)
Witold Dyrka, François Coste, Olgierd Unold, Lukasz Culer, Agnieszka Kaczmarek
How to measure the topological quality of protein grammars? CoRR (2016)
Clovis Galiez, François Coste
Amplitude spectrum distance: measuring the global shape divergence of protein fragments. BMC Bioinform. 16 (2015)
François Coste, Gaëlle Garet, Jacques Nicolas
A bottom-up efficient algorithm learning substitutable languages from positive examples. ICGI (2014)
François Coste, Gaëlle Garet, Agnès Groisillier, Jacques Nicolas, Thierry Tonon
Automated Enzyme Classification by Formal Concept Analysis. ICFCA (2014)
Anthony Bretaudeau, François Coste, Florian Humily, Laurence Garczarek, Gildas Le Corguillé, Christophe Six, Morgane Ratin, Olivier Collin, Wendy M. Schluchter, Frédéric Partensky
CyanoLyase: a database of phycobilin lyase sequences, motifs and functions. Nucleic Acids Res. 41 (Database-Issue) (2013)
Rafael Carrascosa, François Coste, Matthias Gallé, Gabriel G. Infante López
Searching for smallest grammars on large sequences and application to DNA. J. Discrete Algorithms 11 (2012)
François Coste, Gaëlle Garet, Jacques Nicolas
Locally Substitutable Languages for Enhanced Inductive Leaps. ICGI (2012)
Rafael Carrascosa, François Coste, Matthias Gallé, Gabriel G. Infante López
The Smallest Grammar Problem as Constituents Choice and Minimal Grammar Parsing. Algorithms 4 (4) (2011)
Rafael Carrascosa, François Coste, Matthias Gallé, Gabriel G. Infante López
Choosing Word Occurrences for the Smallest Grammar Problem. LATA (2010)
Matthias Gallé, Pierre Peterlongo, François Coste
In-Place Update of Suffix Array while Recoding Words. Int. J. Found. Comput. Sci. 20 (6) (2009)
Matthias Gallé, Pierre Peterlongo, François Coste
In-place Update of Suffix Array while Recoding Words. Stringology (2008)
Bradford Starkie, François Coste, Menno van Zaanen
Progressing the state-of-the-art in grammatical inference by competition: The Omphalos Context-Free Language Learning Competition. AI Commun. 18 (2) (2005)
François Coste, Goulven Kerbellec
A Similar Fragments Merging Approach to Learn Automata on Proteins. ECML (2005)
John Abela, François Coste, Sandro Spina
Mutually Compatible and Incompatible Merges for the Search of the Smallest Consistent DFA. ICGI (2004)
François Coste, Daniel Fredouille, Christopher Kermorvant, Colin de la Higuera
Introducing Domain and Typing Bias in Automata Inference. ICGI (2004)
Bradford Starkie, François Coste, Menno van Zaanen
The Omphalos Context-Free Grammar Learning Competition. ICGI (2004)
François Coste, Daniel Fredouille
Unambiguous Automata Inference by Means of State-Merging Methods. ECML (2003)
François Coste, Daniel Fredouille
Efficient Ambiguity Detection in C-NFA, a Step Towards the Inference on Non Deterministic Automata. ICGI (2000)
François Coste, Jacques Nicolas
How Considering Incompatible State Mergings May Reduce the DFA Induction Search Tree. ICGI (1998)
François Coste, Jacques Nicolas
Inference of Finite Automata: Reducing the Search Space with an Ordering of Pairs of States. ECML (1998)