Protein Similarity Search with Subset Seeds on a Dedicated Reconfigurable Hardware.
Pierre PeterlongoLaurent NoéDominique LavenierGilles GeorgesJulien JacquesGregory KucherovMathieu GiraudPublished in: PPAM (2007)
Keyphrases
- similarity search
- reconfigurable hardware
- mass spectra
- sequence databases
- low cost
- high dimensional
- hardware software
- query processing
- metric space
- similarity measure
- similarity searching
- knn
- high dimensional data
- protein structure
- protein sequences
- computer vision
- fine grain
- image processing
- databases
- amino acids
- field programmable gate array
- nearest neighbor
- functional units
- real time
- dimensionality reduction
- hardware implementation
- molecular biology
- similarity queries
- mass spectrometry
- search algorithm