Simon Tavaré

Publication Activity (10 Years)

Years Active: 1992-2023
Publications (10 Years): 4

Top Topics

Structural Svms

Latent Variables

Gene Expression

Gradient Estimation

Top Venues

J. Appl. Probab.

EURASIP J. Image Video Process.

Publications

Russell Z. Kunes, Mingzhang Yin, Max Land, Doron Haviv, Dana Pe'er, Simon Tavaré
Gradient Estimation for Binary Latent Variables via Gradient Variance Clipping. AAAI (2023)
Russell Z. Kunes, Mingzhang Yin, Max Land, Doron Haviv, Dana Pe'er, Simon Tavaré
Gradient Estimation for Binary Latent Variables via Gradient Variance Clipping. CoRR (2022)
Simon Tavaré
A note on the Screaming Toes game. J. Appl. Probab. 59 (1) (2022)
Anestis Touloumis, John C. Marioni, Simon Tavaré
HDTD: analyzing multi-tissue gene expression data. Bioinform. 32 (14) (2016)
Ernest Turro, William J. Astle, Simon Tavaré
Flexible analysis of RNA-seq data using mixed effects models. Bioinform. 30 (2) (2014)
Alexandra Jauhiainen, Basetti Madhu, Masako Narita, Masashi Narita, John Griffiths, Simon Tavaré
Normalization of metabolomics data with applications to correlation maps. Bioinform. 30 (15) (2014)
Reza Ardekani, Anna K. Greenwood, Catherine L. Peichel, Simon Tavaré
Automated quantification of the schooling behaviour of sticklebacks. EURASIP J. Image Video Process. 2013 (2013)
Andrea Sottoriva, Louis Vermeulen, Simon Tavaré
Modeling Evolutionary Dynamics of Epigenetic Mutations in Hierarchically Organized Tumors. PLoS Comput. Biol. 7 (5) (2011)
Jonathan M. Cairns, Christiana Spyrou, Rory Stark, Mike L. Smith, Andy G. Lynch, Simon Tavaré
BayesPeak - an R package for analysing ChIP-seq data. Bioinform. 27 (5) (2011)
Matthew E. Ritchie, Matthew S. Forrest, Antigone S. Dimas, Caroline Daelemans, Emmanouil T. Dermitzakis, Panagiotis Deloukas, Simon Tavaré
Data analysis issues for allele-specific expression using Illumina's GoldenGate assay. BMC Bioinform. 11 (2010)
Mike L. Smith, Mark J. Dunning, Simon Tavaré, Andy G. Lynch
Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data. BMC Bioinform. 11 (2010)
Andrea Sottoriva, Simon Tavaré
Integrating Approximate Bayesian Computation with Complex Agent-Based Models for Cancer Research. COMPSTAT (2010)
Sergii Ivakhno, Simon Tavaré
CNAnova: a new approach for finding recurrent copy number abnormalities in cancer SNP microarray data. Bioinform. 26 (11) (2010)
Sergii Ivakhno, Tom Royce, Anthony J. Cox, Dirk J. Evers, R. Keira Cheetham, Simon Tavaré
CNAseg - a novel framework for identification of copy number changes in cancer from second-generation sequencing data. Bioinform. 26 (24) (2010)
Dhruv Grover, Simon Tavaré
Finding Behavioral Motifs in Fly Trajectories. Commun. Inf. Syst. 9 (3) (2009)
Matthew E. Ritchie, Benilton S. Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry
R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. Bioinform. 25 (19) (2009)
Simon R. V. Knott, Christopher J. Viggiani, Oscar M. Aparicio, Simon Tavaré
Strategies for analyzing highly enriched IP-chip datasets. BMC Bioinform. 10 (2009)
Christiana Spyrou, Rory Stark, Andy G. Lynch, Simon Tavaré
BayesPeak: Bayesian analysis of ChIP-seq data. BMC Bioinform. 10 (2009)
Mark J. Dunning, Nuno L. Barbosa-Morais, Andy G. Lynch, Simon Tavaré, Matthew E. Ritchie
Statistical issues in the analysis of Illumina data. BMC Bioinform. 9 (2008)
Mark J. Dunning, Mike L. Smith, Matthew E. Ritchie, Simon Tavaré
beadarray: R classes and methods for Illumina bead-based data. Bioinform. 23 (16) (2007)
Pierre Nicolas, Kyoung-Mee Kim, Darryl Shibata, Simon Tavaré
The Stem Cell Population of the Human Colon Crypt: Analysis via Methylation Patterns. PLoS Comput. Biol. 3 (3) (2007)
Dmitriy Skvortsov, Diana Abdueva, Michael E. Stitzer, Steven E. Finkel, Simon Tavaré
Using expression arrays for copy number detection: an example from E. coli. BMC Bioinform. 8 (2007)
Richard Arratia, Andrew D. Barbour, Simon Tavaré
A Tale of Three Couplings: Poisson-Dirichlet and GEM Approximations for Random Permutations. Comb. Probab. Comput. 15 (1-2) (2006)
John C. Marioni, Natalie P. Thorne, Simon Tavaré
BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data. Bioinform. 22 (9) (2006)
Simon Tavaré, Dean C. Adams, Olivier Fedrigo, Gavin J. P. Naylor
A Model for Phylogenetic Inference Using Structural and Chemical Covariates. Pacific Symposium on Biocomputing (2001)
Sophie Schbath, Nathalie Bossard, Simon Tavaré
The Effect of Nonhomogeneous Clone Length Distribution on the Progress of an STS Mapping Project. J. Comput. Biol. 7 (1-2) (2000)
Richard Arratia, Andrew D. Barbour, Simon Tavaré
The Poisson-Dirichlet Distribution And The Scale-Invariant Poisson Process. Comb. Probab. Comput. 8 (5) (1999)
Andrew D. Barbour, Simon Tavaré
A Rate for the Erdös-Turán Law. Comb. Probab. Comput. 3 (1994)
Richard Arratia, Simon Tavaré
Limit Theorems for Combinatorial Structures via Discrete Process Approximations. Random Struct. Algorithms 3 (3) (1992)