Anthony J. Cox

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 10

Top Topics

Haplotype Inference

Dna Copy Number

Top Venues

Publications

Gianmarco Bertola, Anthony J. Cox, Veronica Guerrini, Giovanna Rosone
A Class of Heuristics for Reducing the Number of BWT-Runs in the String Ordering Problem. CPM (2024)
Sergii Ivakhno, Eric Roller, Camilla Colombo, Philip Tedder, Anthony J. Cox
Canvas SPW: calling de novo copy number variants in pedigrees. Bioinform. 34 (3) (2018)
Rudy Arthur, Ole Schulz-Trieglaff, Anthony J. Cox, Jared O'Connell
AKT: ancestry and kinship toolkit. Bioinform. 33 (1) (2017)
Sergii Ivakhno, Camilla Colombo, Stephen Tanner, Philip Tedder, Stefano Berri, Anthony J. Cox
tHapMix: simulating tumour samples through haplotype mixtures. Bioinform. 33 (2) (2017)
Anthony J. Cox, Andrea Farruggia, Travis Gagie, Simon J. Puglisi, Jouni Sirén
RLZAP: Relative Lempel-Ziv with Adaptive Pointers. SPIRE (2016)
Anthony J. Cox, Fabio Garofalo, Giovanna Rosone, Marinella Sciortino
Lightweight LCP Construction for Very Large Collections of Strings. CoRR (2016)
Xiaoyu Chen, Ole Schulz-Trieglaff, Richard Shaw, Bret Barnes, Felix Schlesinger, Morten Källberg, Anthony J. Cox, Semyon Kruglyak, Christopher T. Saunders
Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications. Bioinform. 32 (8) (2016)
Anthony J. Cox, Andrea Farruggia, Travis Gagie, Simon J. Puglisi, Jouni Sirén
RLZAP: Relative Lempel-Ziv with Adaptive Pointers. CoRR (2016)
Rudy Arthur, Jared O'Connell, Ole Schulz-Trieglaff, Anthony J. Cox
Rapid genotype refinement for whole-genome sequencing data using multi-variate normal distributions. Bioinform. 32 (15) (2016)
Anthony J. Cox, Fabio Garofalo, Giovanna Rosone, Marinella Sciortino
Lightweight LCP construction for very large collections of strings. J. Discrete Algorithms 37 (2016)
Jared O'Connell, Ole Schulz-Trieglaff, Emma Carlson, Matthew M. Hims, Niall A. Gormley, Anthony J. Cox
NxTrim: optimized trimming of Illumina mate pair reads. Bioinform. 31 (12) (2015)
Lilian Janin, Ole Schulz-Trieglaff, Anthony J. Cox
BEETL-fastq: a searchable compressed archive for DNA reads. Bioinform. 30 (19) (2014)
Lilian Janin, Giovanna Rosone, Anthony J. Cox
Adaptive reference-free compression of sequence quality scores. Bioinform. 30 (1) (2014)
Christina Ander, Ole Schulz-Trieglaff, Jens Stoye, Anthony J. Cox
metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences. BMC Bioinform. 14 (S-5) (2013)
Markus J. Bauer, Anthony J. Cox, Giovanna Rosone
Lightweight algorithms for constructing and inverting the BWT of string collections. Theor. Comput. Sci. 483 (2013)
Lilian Janin, Giovanna Rosone, Anthony J. Cox
Adaptive reference-free compression of sequence quality scores CoRR (2013)
Markus J. Bauer, Anthony J. Cox, Giovanna Rosone, Marinella Sciortino
Lightweight LCP Construction for Next-Generation Sequencing Datasets CoRR (2013)
Markus J. Bauer, Anthony J. Cox, Giovanna Rosone, Marinella Sciortino
Lightweight LCP Construction for Next-Generation Sequencing Datasets. WABI (2012)
Anthony J. Cox, Tobias Jakobi, Giovanna Rosone, Ole Schulz-Trieglaff
Comparing DNA Sequence Collections by Direct Comparison of Compressed Text Indexes. WABI (2012)
Anthony J. Cox, Markus J. Bauer, Tobias Jakobi, Giovanna Rosone
Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform CoRR (2012)
Anthony J. Cox, Markus J. Bauer, Tobias Jakobi, Giovanna Rosone
Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform. Bioinform. 28 (11) (2012)
Markus J. Bauer, Anthony J. Cox, Giovanna Rosone
Lightweight BWT Construction for Very Large String Collections. CPM (2011)
Sergii Ivakhno, Tom Royce, Anthony J. Cox, Dirk J. Evers, R. Keira Cheetham, Simon Tavaré
CNAseg - a novel framework for identification of copy number changes in cancer from second-generation sequencing data. Bioinform. 26 (24) (2010)
Anthony J. Cox, Nicholas J. Higham
Row-Wise Backward Stable Elimination Methods for the Equality Constrained Least Squares Problem. SIAM J. Matrix Anal. Appl. 21 (1) (1999)