Arlindo L. Oliveira

ORCID

Publication Activity (10 Years)

Years Active: 1991-2024
Publications (10 Years): 30

Top Venues

Publications

Hongwei Bran Li, Fernando Navarro, Ivan Ezhov, Amirhossein Bayat, Dhritiman Das, Florian Kofler, Suprosanna Shit, Diana Waldmannstetter, Johannes C. Paetzold, Xiaobin Hu, Benedikt Wiestler, Lucas Zimmer, Tamaz Amiranashvili, Chinmay Prabhakar, Christoph Berger, Jonas Weidner, Michelle Alonso-Basanta, Arif Rashid, Ujjwal Baid, Wesam Adel, Deniz Alis, Bhakti Baheti, Yingbin Bai, Ishaan Bhat, Sabri Can Cetindag, Wenting Chen, Li Cheng, Prasad Dutande, Lara Dular, Mustafa A. Elattar, Ming Feng, Shengbo Gao, Henkjan Huisman, Weifeng Hu, Shubham Innani, Wei Jiat, Davood Karimi, Hugo J. Kuijf, Jin Tae Kwak, Hoang Long Le, Xiang Lia, Huiyan Lin, Tongliang Liu, Jun Ma, Kai Ma, Ting Ma, Ilkay Öksüz, Robbie Holland, Arlindo L. Oliveira, Jimut Bahan Pal, Xuan Pei, Maoying Qiao, Anindo Saha, Raghavendra Selvan, Linlin Shen, João Lourenço Silva, Ziga Spiclin, Sanjay N. Talbar, Dadong Wang, Wei Wang, Xiong Wang, Yin Wang, Ruiling Xia, Kele Xu, Yanwu Yan, Mert Yergin, Shuang Yu, Lingxi Zeng, YingLin Zhang, Jiachen Zhao, Yefeng Zheng, Martin Zukovec, Richard K. G. Do, Anton S. Becker, Amber L. Simpson, Ender Konukoglu, András Jakab, Spyridon Bakas, Leo Joskowicz, Bjoern H. Menze
QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge. CoRR (2024)
André V. Duarte, Xuandong Zhao, Arlindo L. Oliveira, Lei Li
DE-COP: Detecting Copyrighted Content in Language Models Training Data. CoRR (2024)
Martim Afonso, Praphulla M. S. Bhawsar, Monjoy Saha, Jonas S. Almeida, Arlindo L. Oliveira
Finding Regions of Interest in Whole Slide Images Using Multiple Instance Learning. CoRR (2024)
André V. Duarte, João Marques, Miguel Graça, Miguel Freire, Lei Li, Arlindo L. Oliveira
LumberChunker: Long-Form Narrative Document Segmentation. CoRR (2024)
Tiago Oliveira, Tiago Marques, Arlindo L. Oliveira
Connecting metrics for shape-texture knowledge in computer vision. CoRR (2023)
João Pedro Novo, Manuel Goulão, Lourenço Bandeira, Bruno Martins, Arlindo L. Oliveira
Augmentation-Based Approaches for Overcoming Low Visibility in Street Object Detection. ICMLA (2023)
André V. Duarte, Arlindo L. Oliveira
Improving Embeddings for High-Accuracy Transformer-Based Address Matching Using a Multiple in-Batch Negatives Loss. ICMLA (2023)
André V. Duarte, Arlindo L. Oliveira
Improving Address Matching Using Siamese Transformer Networks. EPIA (2) (2023)
Manuel Goulão, Arlindo L. Oliveira
Pretraining the Vision Transformer Using Self-Supervised Methods for Vision Based Deep Reinforcement Learning. ECAI (2023)
Arlindo L. Oliveira, Tiago Domingos, Mário A. T. Figueiredo, Pedro U. Lima
DeepThought: An Architecture for Autonomous Self-motivated Systems. CoRR (2023)
André V. Duarte, Arlindo L. Oliveira
Improving Address Matching using Siamese Transformer Networks. CoRR (2023)
Ruxandra Barbulescu, Tiago Marques, Arlindo L. Oliveira
Matching the Neuronal Representations of V1 is Necessary to Improve Robustness in CNNs with V1-like Front-ends. CoRR (2023)
Pedro Van Stralen, Dinis L. Rodrigues, Arlindo L. Oliveira, Miguel Nobre Menezes, Fausto J. Pinto
Stenosis Detection in X-ray Coronary Angiography with Deep Neural Networks Leveraged by Attention Mechanisms. ICBRA (2022)
Ana Beatriz Vieira, Ana Catarina Fonseca, José M. Ferro, Arlindo L. Oliveira
Using a Siamese Network to Accurately Detect Ischemic Stroke in Computed Tomography Scans. EPIA (2022)
Manuel Goulão, Arlindo L. Oliveira
Pretraining the Vision Transformer using self-supervised methods for vision based Deep Reinforcement Learning. CoRR (2022)
Rafael Pedro, Arlindo L. Oliveira
Assessing the Impact of Attention and Self-Attention Mechanisms on the Classification of Skin Lesions. IJCNN (2022)
Tiago Gaspar Oliveira, Arlindo L. Oliveira
Assessing Policy, Loss and Planning Combinations in Reinforcement Learning using a New Modular Architecture. CoRR (2022)
Mário Cardoso, André Cavalheiro, Alexandre Borges, Ana Filipa Duarte, Amílcar Soares, Maria João Pereira, Nuno Jardim Nunes, Leonardo Azevedo, Arlindo L. Oliveira
Modeling the Geospatial Evolution of COVID-19 using Spatio-temporal Convolutional Sequence-to-sequence Neural Networks. ACM Trans. Spatial Algorithms Syst. 8 (4) (2022)
Tiago Gaspar Oliveira, Arlindo L. Oliveira
Assessing Policy, Loss and Planning Combinations in Reinforcement Learning Using a New Modular Architecture. EPIA (2022)
Gonçalo Mestre, Ruxandra Barbulescu, Arlindo L. Oliveira, L. Miguel Silveira
Modelling Neuronal Behaviour with Time Series Regression: Recurrent Neural Networks on C. Elegans Data. CoRR (2021)
João Lourenço Silva, Arlindo L. Oliveira
Using Soft Labels to Model Uncertainty in Medical Image Segmentation. CoRR (2021)
Dinis L. Rodrigues, Miguel Nobre Menezes, Fausto J. Pinto, Arlindo L. Oliveira
Automated Detection of Coronary Artery Stenosis in X-ray Angiography using Deep Neural Networks. CoRR (2021)
João Lourenço Silva, Arlindo L. Oliveira
Using Soft Labels to Model Uncertainty in Medical Image Segmentation. BrainLes@MICCAI (2) (2021)
Mário Cardoso, André Cavalheiro, Alexandre Borges, Ana F. Duarte, Amílcar Soares, Maria João Pereira, Nuno J. Nunes, Leonardo Azevedo, Arlindo L. Oliveira
Modeling the geospatial evolution of COVID-19 using spatio-temporal convolutional sequence-to-sequence neural networks. CoRR (2021)
João Lourenço Silva, Miguel Nobre Menezes, Tiago Rodrigues, Beatriz Silva, Fausto J. Pinto, Arlindo L. Oliveira
Encoder-Decoder Architectures for Clinically Relevant Coronary Artery Segmentation. CoRR (2021)
Rafael Pedro, Arlindo L. Oliveira
Assessing the Impact of Attention and Self-Attention Mechanisms on the Classification of Skin Lesions. CoRR (2021)
João Lourenço Silva, Miguel Nobre Menezes, Tiago Rodrigues, Beatriz Silva, Fausto J. Pinto, Arlindo L. Oliveira
Encoder-Decoder Architectures for Clinically Relevant Coronary Artery Segmentation. ICCABS (2021)
Alexandre Borges, Arlindo L. Oliveira
Combining Off and On-Policy Training in Model-Based Reinforcement Learning. CoRR (2021)
Miguel Monteiro, Mário A. T. Figueiredo, Arlindo L. Oliveira
Conditional Random Fields as Recurrent Neural Networks for 3D Medical Imaging Segmentation. CoRR (2018)
Miguel Monteiro, Ana Catarina Fonseca, Ana Teresa Freitas, Teresa Pinho e Melo, Alexandre P. Francisco, José M. Ferro, Arlindo L. Oliveira
Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (6) (2018)
Alexandre P. Francisco, Ricardo Baeza-Yates, Arlindo L. Oliveira
Mining query log graphs towards a query folksonomy. Concurr. Comput. Pract. Exp. 24 (17) (2012)
Ana Graça, João Marques-Silva, Inês Lynce, Arlindo L. Oliveira
Haplotype inference with pseudo-Boolean optimization. Ann. Oper. Res. 184 (1) (2011)
Francisco Fernandes, Paulo G. S. da Fonseca, Luís M. S. Russo, Arlindo L. Oliveira, Ana T. Freitas
Efficient alignment of pyrosequencing reads for re-sequencing applications. BMC Bioinform. 12 (2011)
Dulce Calçada, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira
Flr1 regulatory Network Using an S-System Formalism. J. Bioinform. Comput. Biol. 9 (5) (2011)
Artur J. Ferreira, Arlindo L. Oliveira, Mário A. T. Figueiredo
Sliding Window Update Using Suffix Arrays. DCC (2011)
Alexandra M. Carvalho, Arlindo L. Oliveira
GRISOTTO: A greedy approach to improve combinatorial algorithms for motif discovery with prior knowledge. Algorithms Mol. Biol. 6 (2011)
Dário Abdulrehman, Pedro T. Monteiro, Miguel C. Teixeira, Nuno P. Mira, Artur B. Lourenço, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Alexandre P. Francisco, Sara C. Madeira, Ricardo Santos Aires, Arlindo L. Oliveira, Isabel Sá-Correia, Ana T. Freitas
through a web services interface. Nucleic Acids Res. 39 (Database-Issue) (2011)
Dulce Calçada, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira
Quantitative Modeling the Saccharomyces cerevisiae FLR1 Regulatory Network Using an S-System Formalism. HISB (2011)
Alexandra M. Carvalho, Teemu Roos, Arlindo L. Oliveira, Petri Myllymäki
Discriminative Learning of Bayesian Networks via Factorized Conditional Log-Likelihood. J. Mach. Learn. Res. 12 (2011)
Joana P. Gonçalves, Alexandre P. Francisco, Nuno P. Mira, Miguel C. Teixeira, Isabel Sá-Correia, Arlindo L. Oliveira, Sara C. Madeira
TFRank: network-based prioritization of regulatory associations underlying transcriptional responses. Bioinform. 27 (22) (2011)
Luís M. S. Russo, Gonzalo Navarro, Arlindo L. Oliveira
Fully compressed suffix trees. ACM Trans. Algorithms 7 (4) (2011)
Alexandre P. Francisco, Arlindo L. Oliveira
Fully Generalized Graph Cores. CompleNet (2010)
Sara C. Madeira, Miguel C. Teixeira, Isabel Sá-Correia, Arlindo L. Oliveira
Identification of Regulatory Modules in Time Series Gene Expression Data Using a Linear Time Biclustering Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (1) (2010)
Alexandre P. Francisco, Sophie Schbath, Ana T. Freitas, Arlindo L. Oliveira
Using graph modularity analysis to identify transcription factor binding sites. BIBM Workshops (2010)
Ana Graça, Inês Lynce, João Marques-Silva, Arlindo L. Oliveira
Haplotype Inference by Pure Parsimony: A Survey. J. Comput. Biol. 17 (8) (2010)
Luís M. S. Russo, Gonzalo Navarro, Arlindo L. Oliveira
Parallel and Distributed Compressed Indexes. CPM (2010)
Alexandre P. Francisco, Ricardo Baeza-Yates, Arlindo L. Oliveira
Mining Large Query Induced Graphs towards a Hierarchical Query Folksonomy. SPIRE (2010)
Ana Graça, Inês Lynce, João Marques-Silva, Arlindo L. Oliveira
Efficient and Accurate Haplotype Inference by Combining Parsimony and Pedigree Information. ANB (2010)
Alexandre P. Francisco, Arlindo L. Oliveira
On Community Detection in Very Large Networks. CompleNet (2010)
Paulo Trezentos, Inês Lynce, Arlindo L. Oliveira
Apt-pbo: solving the software dependency problem using pseudo-boolean optimization. ASE (2010)
Orlando Anunciação, Bruno C. Gomes, Susana Vinga, Jorge Gaspar, Arlindo L. Oliveira, José Rueff
A Data Mining Approach for the Detection of High-Risk Breast Cancer Groups. IWPACBB (2010)
Artur J. Ferreira, Arlindo L. Oliveira, Mário A. T. Figueiredo
Time and Memory Efficient Lempel-Ziv Compression Using Suffix Arrays CoRR (2009)
Sara C. Madeira, Arlindo L. Oliveira
A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series. Algorithms Mol. Biol. 4 (2009)
Miguel M. F. Bugalho, Arlindo L. Oliveira
Constant Time Clash Detection in protein Folding. J. Bioinform. Comput. Biol. 7 (1) (2009)
Luís M. S. Russo, Gonzalo Navarro, Arlindo L. Oliveira, Pedro Morales
Approximate String Matching with Compressed Indexes. Algorithms 2 (3) (2009)
Sara C. Madeira, Arlindo L. Oliveira
Efficient Biclustering Algorithms for Time Series Gene Expression Data Analysis. IWANN (2) (2009)
Artur J. Ferreira, Arlindo L. Oliveira, Mário A. T. Figueiredo
On the Use of Suffix Arrays for Memory-Efficient Lempel-Ziv Data Compression CoRR (2009)
Artur J. Ferreira, Arlindo L. Oliveira, Mário A. T. Figueiredo
On the Use of Suffix Arrays for Memory-Efficient Lempel-Ziv Data Compression. DCC (2009)
Luís M. S. Russo, Arlindo L. Oliveira
A compressed self-index using a Ziv-Lempel dictionary. Inf. Retr. 11 (4) (2008)
Inês Lynce, Ana Graça, João Marques-Silva, Arlindo L. Oliveira
Haplotype Inference with Boolean Constraint Solving: An Overview. ICTAI (1) (2008)
André L. Martins, Helena Sofia Pinto, Arlindo L. Oliveira
Using Grammatical Inference Techniques to Learn Ontologies that Describe the Structure of Domain Instances. Appl. Artif. Intell. 22 (1&2) (2008)
Alexandre P. Francisco, Ricardo Baeza-Yates, Arlindo L. Oliveira
Clique Analysis of Query Log Graphs. SPIRE (2008)
Alexandre P. Francisco, Arlindo L. Oliveira, Ana T. Freitas
Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph. ISBRA (2008)
Luís M. S. Russo, Gonzalo Navarro, Arlindo L. Oliveira
Dynamic Fully-Compressed Suffix Trees. CPM (2008)
Ana C. Casimiro, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance. BMC Bioinform. 9 (2008)
Ana Graça, João Marques-Silva, Inês Lynce, Arlindo L. Oliveira
Efficient Haplotype Inference with Combined CP and OR Techniques. CPAIOR (2008)
Luís M. S. Russo, Gonzalo Navarro, Arlindo L. Oliveira
Fully-Compressed Suffix Trees. LATIN (2008)
Artur J. Ferreira, Arlindo L. Oliveira, Mário A. T. Figueiredo
On the Suitability of Suffix Arrays for Lempel-Ziv Data Compression. ICETE (Selected Papers) (2008)
Luís M. S. Russo, Gonzalo Navarro, Arlindo L. Oliveira
Indexed Hierarchical Approximate String Matching. SPIRE (2008)
Pedro T. Monteiro, Nuno D. Mendes, Miguel C. Teixeira, Sofia d'Orey, Sandra Tenreiro, Nuno P. Mira, Hélio Pais, Alexandre P. Francisco, Alexandra M. Carvalho, Artur B. Lourenço, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas
. Nucleic Acids Res. 36 (Database-Issue) (2008)
Artur J. Ferreira, Arlindo L. Oliveira, Mário A. T. Figueiredo
Suffix Arrays - A Competitive Choice for Fast Lempel-Ziv Compressions. SIGMAP (2008)
Miguel M. F. Bugalho, Arlindo L. Oliveira
An Evaluation of the Impact of Side Chain Positioning on the Accuracy of Discrete Models of Protein Structures. BSB (2008)
Xiaoshu Wang, Jonas S. Almeida, Arlindo L. Oliveira
Ontology Design Principles and Normalization Techniques in the Web. DILS (2008)
Luís M. S. Russo, Gonzalo Navarro, Arlindo L. Oliveira
Approximate String Matching with Lempel-Ziv Compressed Indexes. SPIRE (2007)
Alexandra M. Carvalho, Arlindo L. Oliveira
Learning bayesian networks consistent with the optimal branching. ICMLA (2007)
Sara C. Madeira, Arlindo L. Oliveira
An Efficient Biclustering Algorithm for Finding Genes with Similar Patterns in Time-series Expression Data. APBC (2007)
Alexandra M. Carvalho, Arlindo L. Oliveira, Marie-France Sagot
Efficient Learning of Bayesian Network Classifiers. Australian Conference on Artificial Intelligence (2007)
Luís M. S. Russo, Arlindo L. Oliveira
Efficient generation of super condensed neighborhoods. J. Discrete Algorithms 5 (3) (2007)
Ana Cardoso-Cachopo, Arlindo L. Oliveira
Semi-supervised single-label text categorization using centroid-based classifiers. SAC (2007)
João Marques-Silva, Inês Lynce, Ana Graça, Arlindo L. Oliveira
Efficient and Tight Upper Bounds for Haplotype Inference by Pure Parsimony Using Delayed Haplotype Selection. EPIA Workshops (2007)
Ana Graça, João Marques-Silva, Inês Lynce, Arlindo L. Oliveira
Efficient Haplotype Inference with Pseudo-boolean Optimization. AB (2007)
Luís Pedro Coelho, Arlindo L. Oliveira
Dotted Suffix Trees A Structure for Approximate Text Indexing. SPIRE (2006)
José M. Fernandes, Marcelino B. Santos, Arlindo L. Oliveira, João Paulo Cacho Teixeira
DFT and Probabilistic Testability Analysis at RTL. HLDVT (2006)
Miguel C. Teixeira, Pedro T. Monteiro, Pooja Jain, Sandra Tenreiro, Alexandra R. Fernandes, Nuno P. Mira, Marta Alenquer, Ana T. Freitas, Arlindo L. Oliveira, Isabel Sá-Correia
. Nucleic Acids Res. 34 (Database-Issue) (2006)
Luís M. S. Russo, Arlindo L. Oliveira
A Compressed Self-index Using a Ziv-Lempel Dictionary. SPIRE (2006)
Nuno D. Mendes, Ana C. Casimiro, Pedro M. Santos, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas
MUSA: a parameter free algorithm for the identification of biologically significant motifs. Bioinform. 22 (24) (2006)
Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot
An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. 3 (2) (2006)
José M. Fernandes, Marcelino B. Santos, Arlindo L. Oliveira, João Paulo Teixeira
Probabilistic Testability Analysis and DFT Methods at RTL. DDECS (2006)
Sara C. Madeira, Arlindo L. Oliveira
A Linear Time Biclustering Algorithm for Time Series Gene Expression Data. WABI (2005)
André L. Martins, Helena Sofia Pinto, Arlindo L. Oliveira
Using a More Powerful Teacher to Reduce the Number of Queries of the L* Algorithm in Practical Applications. EPIA (2005)
Luís M. S. Russo, Arlindo L. Oliveira
Faster Generation of Super Condensed Neighbourhoods Using Finite Automata. SPIRE (2005)
Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot
A highly scalable algorithm for the extraction of CIS-regulatory regions. APBC (2005)
Luís M. S. Russo, Arlindo L. Oliveira
An Efficient Algorithm for Generating Super Condensed Neighborhoods. CPM (2005)
Miguel M. F. Bugalho, Arlindo L. Oliveira
Inference of regular languages using state merging algorithms with search. Pattern Recognit. 38 (9) (2005)
Sara C. Madeira, Arlindo L. Oliveira
Biclustering Algorithms for Biological Data Analysis: A Survey. IEEE ACM Trans. Comput. Biol. Bioinform. 1 (1) (2004)
Cláudia Antunes, Arlindo L. Oliveira
Constraint Relaxations for Discovering Unknown Sequential Patterns. KDID (2004)
Alberto H. F. Laender, Arlindo L. Oliveira
Special issue on string processing and information retrieval. J. Discrete Algorithms 2 (1) (2004)
José Poveda, Michael Gould, Arlindo L. Oliveira
A New Quick Point Location Algorithm. ER (Workshops) (2004)
José M. Fernandes, Marcelino B. Santos, Arlindo L. Oliveira, João Paulo Teixeira
A Probabilistic Method for the Computation of Testability of RTL Constructs. DATE (2004)
Alexandra M. Carvalho, Arlindo L. Oliveira, Ana T. Freitas, Marie-France Sagot
A parallel algorithm for the extraction of structured motifs. SAC (2004)

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Publication Activity (10 Years)

Top Topics

Top Venues

Arlindo L. Oliveira