Alexandre P. Francisco

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 58

Top Topics

Graph Representations

Betweenness Centrality

Stream Processing

Role Assignment

Top Venues

Publications

Bruno Lourenço, Cátia Vaz, Miguel E. Coimbra, Alexandre P. Francisco
phyloDB: A framework for large-scale phylogenetic analysis of sequence based typing data. SoftwareX 26 (2024)
João Almeida, Daniel Santos, José Rui Figueira, Alexandre P. Francisco
A multi-objective mixed integer linear programming model for thesis defence scheduling. Eur. J. Oper. Res. 312 (1) (2024)
António Pedro Branco, Cátia Vaz, Alexandre P. Francisco
Computing RF Tree Distance over Succinct Representations. Algorithms 17 (1) (2024)
Nyckollas Brandão, André Jesus, André Páscoa, Alexandre P. Francisco, Mário Ramirez, Cátia Vaz
A modular and scalable web platform for computational phylogenetics. CoRR (2024)
João Nuno Ferreira Alves, Luís Manuel Silveira Russo, Alexandre P. Francisco, Siegfried Benkner
A Novel Triangular Space-Filling Curve for Cache-Oblivious In-Place Transposition of Square Matrices. IPDPS (2023)
António Pedro Branco, Cátia Vaz, Alexandre P. Francisco
Phylogenetic tree distance computation over succinct representations. CoRR (2023)
Joaquim Espada, Alexandre P. Francisco, Tatiana Rocher, Luís M. S. Russo, Cátia Vaz
On Finding Optimal (Dynamic) Arborescences. CoRR (2023)
Joaquim Espada, Alexandre P. Francisco, Tatiana Rocher, Luís M. S. Russo, Cátia Vaz
On Finding Optimal (Dynamic) Arborescences. Algorithms 16 (12) (2023)
Bruno Lourenço, Cátia Vaz, Miguel E. Coimbra, Alexandre P. Francisco
phyloDB: A framework for large-scale phylogenetic analysis. CoRR (2023)
João Nuno Ferreira Alves, Luís Manuel Silveira Russo, Alexandre P. Francisco
Cache-oblivious Hilbert Curve-based Blocking Scheme for Matrix Transposition. ACM Trans. Math. Softw. 48 (4) (2022)
Alexandre P. Francisco, Travis Gagie, Dominik Köppl, Susana Ladra, Gonzalo Navarro
Correction to: Graph Compression for Adjacency-Matrix Multiplication. SN Comput. Sci. 3 (3) (2022)
Miguel E. Coimbra, Sérgio Esteves, Alexandre P. Francisco, Luís Veiga
VeilGraph: incremental graph stream processing. J. Big Data 9 (1) (2022)
Miguel E. Coimbra, Joana Hrotkó, Alexandre P. Francisco, Luís M. S. Russo, Guillermo de Bernardo, Susana Ladra, Gonzalo Navarro
A practical succinct dynamic graph representation. Inf. Comput. 285 (Part) (2022)
Alexandre P. Francisco, Travis Gagie, Dominik Köppl, Susana Ladra, Gonzalo Navarro
Graph Compression for Adjacency-Matrix Multiplication. SN Comput. Sci. 3 (3) (2022)
Luís M. S. Russo, Diogo M. Costa, Rui Henriques, Hideo Bannai, Alexandre P. Francisco
Order-preserving pattern matching indeterminate strings. Inf. Comput. 289 (Part) (2022)
Andreia Sofia Teixeira, Francisco C. Santos, Alexandre P. Francisco, Fernando P. Santos
Eliciting Fairness in N-Player Network Games through Degree-Based Role Assignment. Complex. 2021 (2021)
Andreia Sofia Teixeira, Francisco C. Santos, Alexandre P. Francisco, Fernando P. Santos
Evolution of collective fairness in complex networks through degree-based role assignment. CoRR (2021)
Luís M. S. Russo, Alexandre P. Francisco
Small Longest Tandem Scattered Subsequences. Sci. Ann. Comput. Sci. 31 (1) (2021)
Andreia Sofia Teixeira, Francisco C. Santos, Alexandre P. Francisco, Fernando P. Santos
Eliciting Fairness in Multiplayer Bargaining through Network-Based Role Assignment. AAMAS (2021)
Cátia Vaz, Marta Nascimento, João A. Carriço, Tatiana Rocher, Alexandre P. Francisco
Distance-based phylogenetic inference from typing data: a unifying view. Briefings Bioinform. 22 (3) (2021)
Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga
An analysis of the graph processing landscape. J. Big Data 8 (1) (2021)
Miguel E. Coimbra, Alexandre P. Francisco, Luís M. S. Russo, Guillermo de Bernardo, Susana Ladra, Gonzalo Navarro
On Dynamic Succinct Graph Representations. DCC (2020)
Luís M. S. Russo, Tobias Dietz, José Rui Figueira, Alexandre P. Francisco, Stefan Ruzika
Sparsifying parity-check matrices. Appl. Soft Comput. 96 (2020)
Luís M. S. Russo, Ana Sofia D. Correia, Gonzalo Navarro, Alexandre P. Francisco
Approximating Optimal Bidirectional Macro Schemes. DCC (2020)
Luís M. S. Russo, Alexandre P. Francisco
Small Longest Tandem Scattered Subsequences. CoRR (2020)
Luís M. S. Russo, Ana Sofia D. Correia, Gonzalo Navarro, Alexandre P. Francisco
Approximating Optimal Bidirectional Macro Schemes. CoRR (2020)
Diogo M. Costa, Alexandre P. Francisco, Luís M. S. Russo
Hardness of Modern Games. CoRR (2020)
Luís M. S. Russo, Alexandre P. Francisco, Tatiana Rocher
Incremental Multiple Longest Common Sub-Sequences. CoRR (2020)
Cátia Vaz, Marta Nascimento, João A. Carriço, Tatiana Rocher, Alexandre P. Francisco
Distance-based phylogenetic inference from typing data: a unifying view. CoRR (2020)
Luís M. S. Russo, Tobias Dietz, José Rui Figueira, Alexandre P. Francisco, Stefan Ruzika
Sparsifying Parity-Check Matrices. CoRR (2020)
Diogo M. Costa, Luís M. S. Russo, Rui Henriques, Hideo Bannai, Alexandre P. Francisco
Order-Preserving Pattern Matching Indeterminate Strings. CoRR (2019)
Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga
Distributed graphs: in search of fast, low-latency, resource-efficient, semantics-rich Big-Data processing. CoRR (2019)
Miguel E. Coimbra, Alexandre P. Francisco, Luís M. S. Russo, Guillermo de Bernardo, Susana Ladra, Gonzalo Navarro
On dynamic succinct graph representations. CoRR (2019)
Rui Henriques, Alexandre P. Francisco, Luís M. S. Russo, Hideo Bannai
Order-Preserving Pattern Matching Indeterminate Strings. CPM (2018)
Luís M. S. Russo, Andreia Sofia Teixeira, Alexandre P. Francisco
Linking and Cutting Spanning Trees. Algorithms 11 (4) (2018)
Pedro C. Souto, Andreia Sofia Teixeira, Alexandre P. Francisco, Francisco C. Santos
Capturing Financial Volatility Through Simple Network Measures. COMPLEX NETWORKS (2) (2018)
Luís M. S. Russo, Andreia Sofia Teixeira, Alexandre P. Francisco
Linking and Cutting Spanning Trees. CoRR (2018)
Andreia Sofia Teixeira, Francisco Fernandes, Alexandre P. Francisco
SpliceTAPyR - An Efficient Method for Transcriptome Alignment. Int. J. Found. Comput. Sci. 29 (8) (2018)
João A. Carriço, Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Bruno Ribeiro-Gonçalves, Cátia Vaz
Fast phylogenetic inference from typing data. Algorithms Mol. Biol. 13 (1) (2018)
Miguel E. Coimbra, Renato Rosa, Sérgio Esteves, Alexandre P. Francisco, Luís Veiga
GraphBolt: Streaming Graph Approximations on Big Data. CoRR (2018)
Miguel Monteiro, Ana Catarina Fonseca, Ana Teresa Freitas, Teresa Pinho e Melo, Alexandre P. Francisco, José M. Ferro, Arlindo L. Oliveira
Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (6) (2018)
Miguel E. Coimbra, Mennan Selimi, Alexandre P. Francisco, Felix Freitag, Luís Veiga
Gelly-scheduling: distributed graph processing for service placement in community networks. SAC (2018)
Andreia Sofia Teixeira, Pedro T. Monteiro, João A. Carriço, Francisco C. Santos, Alexandre P. Francisco
Large-Scale Simulations of Bacterial Populations Over Complex Networks. J. Comput. Biol. 25 (8) (2018)
Alexandre P. Francisco, Travis Gagie, Susana Ladra, Gonzalo Navarro
Exploiting Computation-Friendly Graph Compression Methods for Adjacency-Matrix Multiplication. DCC (2018)
Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga
Gelly-Scheduling: Distributed Graph Processing for Network Service Placement. CoRR (2017)
Bruno Dantas, Calmenelias Fleitas, Alexandre Almeida, João Forja, Alexandre P. Francisco, José Simão, Cátia Vaz
NGSPipes: Fostering Reproducibility and Scalability in Biosciences. BCB (2017)
Marta Nascimento, Adriano Sousa, Mário Ramirez, Alexandre P. Francisco, João A. Carriço, Cátia Vaz
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods. Bioinform. 33 (1) (2017)
Alexandre P. Francisco, Travis Gagie, Susana Ladra, Gonzalo Navarro
Exploiting Computation-Friendly Graph Compression Methods. CoRR (2017)
Alexandre P. Francisco, Marta Nascimento, Cátia Vaz
Dynamic Phylogenetic Inference for Sequence-based Typing Data. BCB (2017)
Miguel E. Coimbra, Alexandre P. Francisco, Luís Veiga
Study on Resource Efficiency of Distributed Graph Processing. CoRR (2017)
Andreia Sofia Teixeira, Pedro T. Monteiro, João A. Carriço, Francisco C. Santos, Alexandre P. Francisco
Using Spark and GraphX to Parallelize Large-Scale Simulations of Bacterial Populations over Host Contact Networks. ICA3PP (2017)
Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Cátia Vaz
Towards Distance-Based Phylogenetic Inference in Average-Case Linear-Time. WABI (2017)
Bruno Dantas, Calmenelias Fleitas, Alexandre P. Francisco, José Simão, Cátia Vaz
Beyond NGS data sharing and towards open science. CoRR (2017)
Hugo Lopes, H. Sofia Pinto, Alexandre P. Francisco
Influence and Sentiment Homophily on Twitter Social Circles. CompleNet (2016)
Luís M. S. Russo, Alexandre P. Francisco
Extending quick hypervolume. J. Heuristics 22 (3) (2016)
Pedro Rijo, Alexandre P. Francisco, Mário J. Silva
Evaluating the impact of k-anonymization on the inference of interaction networks. Trans. Data Priv. 9 (1) (2016)
Andreia Sofia Teixeira, Francisco C. Santos, Alexandre P. Francisco
Spanning Edge Betweenness in Practice. CompleNet (2016)
Bruno Ribeiro-Gonçalves, Alexandre P. Francisco, Cátia Vaz, Mário Ramirez, João André Carriço
PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Naércio Magaia, Alexandre P. Francisco, Paulo Rogério Pereira, Miguel Correia
Betweenness centrality in Delay Tolerant Networks: A survey. Ad Hoc Networks 33 (2015)
Mário J. Silva, Pedro Rijo, Alexandre P. Francisco
Evaluating the Impact of Anonymization on Large Interaction Network Datasets. PSBD@CIKM (2014)
Cátia Vaz, Alexandre P. Francisco, Mickael Silva, Keith A. Jolley, James E. Bray, Hannes Pouseele, Jörg Rothgänger, Mário Ramirez, João A. Carriço
TypOn: the microbial typing ontology. J. Biomed. Semant. 5 (2014)
Diogo Anjos, Paulo Carreira, Alexandre P. Francisco
Real-Time Integration of Building Energy Data. BigData Congress (2014)
Luís M. S. Russo, Alexandre P. Francisco
Quick Hypervolume. IEEE Trans. Evol. Comput. 18 (4) (2014)
Luís M. S. Russo, Alexandre P. Francisco
Quick HyperVolume CoRR (2012)
Alexandre P. Francisco, Cátia Vaz, Pedro T. Monteiro, José Melo-Cristino, Mário Ramirez, João A. Carriço
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods. BMC Bioinform. 13 (2012)
Alexandre P. Francisco, Ricardo Baeza-Yates, Arlindo L. Oliveira
Mining query log graphs towards a query folksonomy. Concurr. Comput. Pract. Exp. 24 (17) (2012)
Susana Vinga, Alexandra M. Carvalho, Alexandre P. Francisco, Luís M. S. Russo, Jonas S. Almeida
Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis. Algorithms Mol. Biol. 7 (2012)
Dário Abdulrehman, Pedro T. Monteiro, Miguel C. Teixeira, Nuno P. Mira, Artur B. Lourenço, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Alexandre P. Francisco, Sara C. Madeira, Ricardo Santos Aires, Arlindo L. Oliveira, Isabel Sá-Correia, Ana T. Freitas
through a web services interface. Nucleic Acids Res. 39 (Database-Issue) (2011)
Ricardo Santos Aires, João A. Carriço, Alexandre P. Francisco, Sara C. Madeira
Regulatory Network. PACBB (2011)
Joana P. Gonçalves, Alexandre P. Francisco, Nuno P. Mira, Miguel C. Teixeira, Isabel Sá-Correia, Arlindo L. Oliveira, Sara C. Madeira
TFRank: network-based prioritization of regulatory associations underlying transcriptional responses. Bioinform. 27 (22) (2011)
Alexandre P. Francisco, Arlindo L. Oliveira
Fully Generalized Graph Cores. CompleNet (2010)
Alexandre P. Francisco, Sophie Schbath, Ana T. Freitas, Arlindo L. Oliveira
Using graph modularity analysis to identify transcription factor binding sites. BIBM Workshops (2010)
João Almeida, João Tiple, Mário Ramirez, José Melo-Cristino, Cátia Vaz, Alexandre P. Francisco, João A. Carriço
An Ontology and a REST API for Sequence Based Microbial Typing Data. JBI (2010)
Alexandre P. Francisco, Ricardo Baeza-Yates, Arlindo L. Oliveira
Mining Large Query Induced Graphs towards a Hierarchical Query Folksonomy. SPIRE (2010)
Alexandre P. Francisco, Arlindo L. Oliveira
On Community Detection in Very Large Networks. CompleNet (2010)
Alexandre P. Francisco, Miguel Bugalho, Mário Ramirez, João A. Carriço
Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach. BMC Bioinform. 10 (2009)
Alexandre P. Francisco, Ricardo Baeza-Yates, Arlindo L. Oliveira
Clique Analysis of Query Log Graphs. SPIRE (2008)
Alexandre P. Francisco, Arlindo L. Oliveira, Ana T. Freitas
Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph. ISBRA (2008)
Pedro T. Monteiro, Nuno D. Mendes, Miguel C. Teixeira, Sofia d'Orey, Sandra Tenreiro, Nuno P. Mira, Hélio Pais, Alexandre P. Francisco, Alexandra M. Carvalho, Artur B. Lourenço, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas
. Nucleic Acids Res. 36 (Database-Issue) (2008)