Mário Ramirez

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 5

Top Topics

Database Integration

Multiple Data Sources

Ontology Evolution

Highly Flexible

Top Venues

Nucleic Acids Res.

J. Biomed. Semant.

Publications

Nyckollas Brandão, André Jesus, André Páscoa, Alexandre P. Francisco, Mário Ramirez, Cátia Vaz
A modular and scalable web platform for computational phylogenetics. CoRR (2024)
Rafael Mamede, Pedro Vila-Cerqueira, Mickael Silva, João A. Carriço, Mário Ramirez
Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas. Nucleic Acids Res. 49 (Database-Issue) (2021)
Tiago F. Jesus, Bruno Ribeiro-Gonçalves, Diogo N. Silva, Valeria Bortolaia, Mário Ramirez, João A. Carriço
Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data. Nucleic Acids Res. 47 (Database-Issue) (2019)
Marta Nascimento, Adriano Sousa, Mário Ramirez, Alexandre P. Francisco, João A. Carriço, Cátia Vaz
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods. Bioinform. 33 (1) (2017)
Bruno Ribeiro-Gonçalves, Alexandre P. Francisco, Cátia Vaz, Mário Ramirez, João André Carriço
PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Luís Pedro Coelho, Catarina Pato, Ana Friães, Ariane Neumann, Maren von Köckritz-Blickwede, Mário Ramirez, João André Carriço
Automatic determination of NET (neutrophil extracellular traps) coverage in fluorescent microscopy images. Bioinform. 31 (14) (2015)
Cátia Vaz, Alexandre P. Francisco, Mickael Silva, Keith A. Jolley, James E. Bray, Hannes Pouseele, Jörg Rothgänger, Mário Ramirez, João A. Carriço
TypOn: the microbial typing ontology. J. Biomed. Semant. 5 (2014)
Alexandre P. Francisco, Cátia Vaz, Pedro T. Monteiro, José Melo-Cristino, Mário Ramirez, João A. Carriço
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods. BMC Bioinform. 13 (2012)
João Almeida, João Tiple, Mário Ramirez, José Melo-Cristino, Cátia Vaz, Alexandre P. Francisco, João A. Carriço
An Ontology and a REST API for Sequence Based Microbial Typing Data. JBI (2010)
Alexandre P. Francisco, Miguel Bugalho, Mário Ramirez, João A. Carriço
Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach. BMC Bioinform. 10 (2009)
Francisco R. Pinto, João A. Carriço, Mário Ramirez, Jonas S. Almeida
Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement. BMC Bioinform. 8 (2007)