James E. Bray

Publication Activity (10 Years)

Years Active: 1999-2022
Publications (10 Years): 3

Top Topics

Ontology Evolution

Decision Models

Escherichia Coli

Top Venues

PLoS Comput. Biol.

Database J. Biol. Databases Curation

J. Biomed. Semant.

Publications

Margaret J. Varga, Holly B. Bratcher, Keith A. Jolley, Odile B. Harrison, James E. Bray, Martin C. J. Maiden
Visual Analytics Exploration of PubMLST Meningitis Genomic Data. BIBM (2022)
Keith A. Jolley, James E. Bray, Martin C. J. Maiden
A RESTful application programming interface for the PubMLST molecular typing and genome databases. Database J. Biol. Databases Curation 2017 (2017)
Connor Sharp, James E. Bray, Nicholas G. Housden, Martin C. J. Maiden, Colin Kleanthous
Diversity and distribution of nuclease bacteriocins in bacterial genomes revealed using Hidden Markov Models. PLoS Comput. Biol. 13 (7) (2017)
Cátia Vaz, Alexandre P. Francisco, Mickael Silva, Keith A. Jolley, James E. Bray, Hannes Pouseele, Jörg Rothgänger, Mário Ramirez, João A. Carriço
TypOn: the microbial typing ontology. J. Biomed. Semant. 5 (2014)
Andries J. van Tonder, Shilan Mistry, James E. Bray, Dorothea M. C. Hill, Alison J. Cody, Chris L. Farmer, Keith P. Klugman, Anne von Gottberg, Stephen D. Bentley, Julian Parkhill, Keith A. Jolley, Martin C. J. Maiden, Angela B. Brueggemann
Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model. PLoS Comput. Biol. 10 (8) (2014)
James E. Bray, Russell L. Marsden, Stuart C. G. Rison, Alexei Savchenko, Aled M. Edwards, Janet M. Thornton, Christine A. Orengo
A practical and robust sequence search strategy for structural genomics target selection. Bioinform. 20 (14) (2004)
Frances M. G. Pearl, C. F. Bennett, James E. Bray, Andrew P. Harrison, Nigel J. Martin, Adrian J. Shepherd, Ian Sillitoe, Janet M. Thornton, Christine A. Orengo
The CATH database: an extended protein family resource for structural and functional genomics. Nucleic Acids Res. 31 (1) (2003)
Daniel W. A. Buchan, Stuart C. G. Rison, James E. Bray, David A. Lee, Frances M. G. Pearl, Janet M. Thornton, Christine A. Orengo
Gene3D: structural assignments for the biologist and bioinformaticist alike. Nucleic Acids Res. 31 (1) (2003)
Frances M. G. Pearl, Nigel J. Martin, James E. Bray, Daniel W. A. Buchan, Andrew P. Harrison, David A. Lee, Gabrielle A. Reeves, Adrian J. Shepherd, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton, Christine A. Orengo
A rapid classification protocol for the CATH Domain Database to support structural genomics. Nucleic Acids Res. 29 (1) (2001)
Frances M. G. Pearl, David A. Lee, James E. Bray, Ian Sillitoe, Annabel E. Todd, Andrew P. Harrison, Janet M. Thornton, Christine A. Orengo
Assigning genomic sequences to CATH. Nucleic Acids Res. 28 (1) (2000)
Christine A. Orengo, Frances M. G. Pearl, James E. Bray, Annabel E. Todd, A. C. Martin, Loredana Lo Conte, Janet M. Thornton
The CATH Database provides insights into protein structure/function relationships. Nucleic Acids Res. 27 (1) (1999)