João A. Carriço

Publication Activity (10 Years)

Years Active: 2001-2021
Publications (10 Years): 8

Top Topics

Complex Networks

Data Visualization

Degree Centrality

Ontology Evolution

Top Venues

Nucleic Acids Res.

J. Comput. Biol.

Publications

Rafael Mamede, Pedro Vila-Cerqueira, Mickael Silva, João A. Carriço, Mário Ramirez
Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas. Nucleic Acids Res. 49 (Database-Issue) (2021)
Cátia Vaz, Marta Nascimento, João A. Carriço, Tatiana Rocher, Alexandre P. Francisco
Distance-based phylogenetic inference from typing data: a unifying view. Briefings Bioinform. 22 (3) (2021)
Cátia Vaz, Marta Nascimento, João A. Carriço, Tatiana Rocher, Alexandre P. Francisco
Distance-based phylogenetic inference from typing data: a unifying view. CoRR (2020)
Tiago F. Jesus, Bruno Ribeiro-Gonçalves, Diogo N. Silva, Valeria Bortolaia, Mário Ramirez, João A. Carriço
Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data. Nucleic Acids Res. 47 (Database-Issue) (2019)
João A. Carriço, Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Bruno Ribeiro-Gonçalves, Cátia Vaz
Fast phylogenetic inference from typing data. Algorithms Mol. Biol. 13 (1) (2018)
Andreia Sofia Teixeira, Pedro T. Monteiro, João A. Carriço, Francisco C. Santos, Alexandre P. Francisco
Large-Scale Simulations of Bacterial Populations Over Complex Networks. J. Comput. Biol. 25 (8) (2018)
Marta Nascimento, Adriano Sousa, Mário Ramirez, Alexandre P. Francisco, João A. Carriço, Cátia Vaz
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods. Bioinform. 33 (1) (2017)
Andreia Sofia Teixeira, Pedro T. Monteiro, João A. Carriço, Francisco C. Santos, Alexandre P. Francisco
Using Spark and GraphX to Parallelize Large-Scale Simulations of Bacterial Populations over Host Contact Networks. ICA3PP (2017)
Cátia Vaz, Alexandre P. Francisco, Mickael Silva, Keith A. Jolley, James E. Bray, Hannes Pouseele, Jörg Rothgänger, Mário Ramirez, João A. Carriço
TypOn: the microbial typing ontology. J. Biomed. Semant. 5 (2014)
Alexandre P. Francisco, Cátia Vaz, Pedro T. Monteiro, José Melo-Cristino, Mário Ramirez, João A. Carriço
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods. BMC Bioinform. 13 (2012)
André Valério Carreiro, Orlando Anunciação, João A. Carriço, Sara C. Madeira
Biclustering-Based Classification of Clinical Expression Time Series: A Case Study in Patients with Multiple Sclerosis. PACBB (2011)
Ricardo Santos Aires, João A. Carriço, Alexandre P. Francisco, Sara C. Madeira
Regulatory Network. PACBB (2011)
João Almeida, João Tiple, Mário Ramirez, José Melo-Cristino, Cátia Vaz, Alexandre P. Francisco, João A. Carriço
An Ontology and a REST API for Sequence Based Microbial Typing Data. JBI (2010)
Alexandre P. Francisco, Miguel Bugalho, Mário Ramirez, João A. Carriço
Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach. BMC Bioinform. 10 (2009)
Francisco R. Pinto, João A. Carriço, Mário Ramirez, Jonas S. Almeida
Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement. BMC Bioinform. 8 (2007)
Sara Silva, Rodrigo Gouveia-Oliveira, António Maretzek, João A. Carriço, Thorolfur Gudnason, Karl G. Kristinsson, Karl Ekdahl, António Brito-Avô, Alexander Tomasz, Ilda Santos Sanches, Hermínia de Lencastre, Jonas S. Almeida
EURISWEB - Web-based epidemiological surveillance of antibiotic-resistant pneumococci in Day Care Centers. BMC Medical Informatics Decis. Mak. 3 (2003)
Jonas S. Almeida, João A. Carriço, António Maretzek, Peter A. Noble, Madilyn Fletcher
Analysis of genomic sequences by Chaos Game Representation. Bioinform. 17 (5) (2001)