David A. Lee

Publication Activity (10 Years)

Years Active: 2000-2018
Publications (10 Years): 6

Top Topics

Genome Sequences

Biological Entities

Gene Prediction

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Tony E. Lewis, Ian Sillitoe, Natalie L. Dawson, Su Datt Lam, Tristan Clarke, David A. Lee, Christine A. Orengo, Jonathan G. Lees
Gene3D: Extensive prediction of globular domains in proteins. Nucleic Acids Res. 46 (Database-Issue) (2018)
Tony E. Lewis, Ian Sillitoe, Natalie L. Dawson, Su Datt Lam, Tristan Clarke, David A. Lee, Christine A. Orengo, Jonathan G. Lees
Gene3D: Extensive prediction of globular domains in proteins. Nucleic Acids Res. 46 (Database-Issue) (2018)
Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, David A. Lee, Paul Ashford, Christine A. Orengo, Ian Sillitoe
CATH: an expanded resource to predict protein function through structure and sequence. Nucleic Acids Res. 45 (Database-Issue) (2017)
Su Datt Lam, Natalie L. Dawson, Sayoni Das, Ian Sillitoe, Paul Ashford, David A. Lee, Sonja Lehtinen, Christine A. Orengo, Jonathan G. Lees
Gene3D: expanding the utility of domain assignments. Nucleic Acids Res. 44 (Database-Issue) (2016)
David A. Lee, Sayoni Das, Natalie L. Dawson, Dragana Dobrijevic, John Ward, Christine A. Orengo
Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases. PLoS Comput. Biol. 12 (6) (2016)
Sayoni Das, David A. Lee, Ian Sillitoe, Natalie L. Dawson, Jonathan G. Lees, Christine A. Orengo
Functional classification of CATH superfamilies: a domain-based approach for protein function annotation. Bioinform. 32 (18) (2016)
Sayoni Das, Ian Sillitoe, David A. Lee, Jonathan G. Lees, Natalie L. Dawson, John Ward, Christine A. Orengo
CATH FunFHMMer web server: protein functional annotations using functional family assignments. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Ian Sillitoe, Tony E. Lewis, Alison L. Cuff, Sayoni Das, Paul Ashford, Natalie L. Dawson, Nicholas Furnham, Roman A. Laskowski, David A. Lee, Jonathan G. Lees, Sonja Lehtinen, Romain A. Studer, Janet M. Thornton, Christine A. Orengo
CATH: comprehensive structural and functional annotations for genome sequences. Nucleic Acids Res. 43 (Database-Issue) (2015)
Sayoni Das, David A. Lee, Ian Sillitoe, Natalie L. Dawson, Jonathan G. Lees, Christine A. Orengo
Functional classification of CATH superfamilies: a domain-based approach for protein function annotation. Bioinform. 31 (21) (2015)
Jonathan G. Lees, David A. Lee, Romain A. Studer, Natalie L. Dawson, Ian Sillitoe, Sayoni Das, Corin Yeats, Benoit H. Dessailly, Robert Rentzsch, Christine A. Orengo
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis. Nucleic Acids Res. 42 (Database-Issue) (2014)
Ian Sillitoe, Alison L. Cuff, Benoit H. Dessailly, Natalie L. Dawson, Nicholas Furnham, David A. Lee, Jonathan G. Lees, Tony E. Lewis, Romain A. Studer, Robert Rentzsch, Corin Yeats, Janet M. Thornton, Christine A. Orengo
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures. Nucleic Acids Res. 41 (Database-Issue) (2013)
Corin Yeats, Michael Maibaum, Russell L. Marsden, Mark Dibley, David A. Lee, Sarah Addou, Christine A. Orengo
Gene3D: modelling protein structure, function and evolution. Nucleic Acids Res. 34 (Database-Issue) (2006)
Frances M. G. Pearl, Annabel E. Todd, Ian Sillitoe, Mark Dibley, Oliver Redfern, Tony E. Lewis, Christopher Bennett, Russell L. Marsden, Alastair Grant, David A. Lee, Adrian Akpor, Michael Maibaum, Andrew P. Harrison, Timothy Dallman, Gabrielle A. Reeves, Ilhem Diboun, Sarah Addou, Stefano Lise, Caroline E. Johnston, Antonio Sillero, Janet M. Thornton, Christine A. Orengo
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. Nucleic Acids Res. 33 (Database-Issue) (2005)
David A. Lee, Sandrine Fefeu, Adrian A. Edo-Ukeh, Christine A. Orengo, Christine Slingsby
EyeSite: a semi-automated database of protein families in the eye. Nucleic Acids Res. 32 (Database-Issue) (2004)
David A. Lee, Alastair Grant, Ian Sillitoe, Mark Dibley, Juan Garcia Ranea, Christine A. Orengo
A structural perspective on genome evolution. RECOMB (2004)
Daniel W. A. Buchan, Stuart C. G. Rison, James E. Bray, David A. Lee, Frances M. G. Pearl, Janet M. Thornton, Christine A. Orengo
Gene3D: structural assignments for the biologist and bioinformaticist alike. Nucleic Acids Res. 31 (1) (2003)
Frances M. G. Pearl, Nigel J. Martin, James E. Bray, Daniel W. A. Buchan, Andrew P. Harrison, David A. Lee, Gabrielle A. Reeves, Adrian J. Shepherd, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton, Christine A. Orengo
A rapid classification protocol for the CATH Domain Database to support structural genomics. Nucleic Acids Res. 29 (1) (2001)
M. Mar Albà, David A. Lee, Frances M. G. Pearl, Adrian J. Shepherd, Nigel J. Martin, Christine A. Orengo, Paul Kellam
VIDA: a virus database system for the organization of animal virus genome open reading frames. Nucleic Acids Res. 29 (1) (2001)
Frances M. G. Pearl, David A. Lee, James E. Bray, Ian Sillitoe, Annabel E. Todd, Andrew P. Harrison, Janet M. Thornton, Christine A. Orengo
Assigning genomic sequences to CATH. Nucleic Acids Res. 28 (1) (2000)